RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 GPR183P32249 361 aa16.82■□□□□ 0.28
SMC4-221ENST00000489573 PLP1P60201 277 aa16.82■□□□□ 0.28
SMC4-221ENST00000489573 RPL15P61313 204 aaKnown RBP16.82■□□□□ 0.28
SMC4-221ENST00000489573 FAM78BQ5VT40 261 aa16.82■□□□□ 0.28
SMC4-221ENST00000489573 CITED4Q96RK1 184 aa16.82■□□□□ 0.28
SMC4-221ENST00000489573 JMJD8Q96S16 334 aa16.82■□□□□ 0.28
SMC4-221ENST00000489573 ATP6V0BQ99437 205 aa16.82■□□□□ 0.28
SMC4-221ENST00000489573 RNF2Q99496 336 aa16.82■□□□□ 0.28
SMC4-221ENST00000489573 KLK15Q9H2R5 256 aa16.82■□□□□ 0.28
SMC4-221ENST00000489573 SEPSECSQ9HD40 501 aaKnown RBP16.82■□□□□ 0.28
SMC4-221ENST00000489573 DNAJC4Q9NNZ3 241 aa16.82■□□□□ 0.28
SMC4-221ENST00000489573 ZFHX3Q15911 3703 aa16.82■□□□□ 0.28
SMC4-221ENST00000489573 HMGB3O15347 200 aaKnown RBP16.81■□□□□ 0.28
SMC4-221ENST00000489573 NUPL2O15504 423 aaKnown RBP16.81■□□□□ 0.28
SMC4-221ENST00000489573 RAB9AP51151 201 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 FGF8P55075 233 aaPredicted RBP16.81■□□□□ 0.28
SMC4-221ENST00000489573 CCL20P78556 96 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 Q6ZSV7 163 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 TMEM37Q8WXS4 190 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 MRPL32Q9BYC8 188 aaKnown RBP16.81■□□□□ 0.28
SMC4-221ENST00000489573 SERTAD4Q9NUC0 356 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 FUT9Q9Y231 359 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 A0A0G2JLM5 398 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 CTSGP08311 255 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 PSMB8P28062 276 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 C10orf113Q5VZT2 155 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 SPATA31B1PQ5VZV4 182 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 CLEC19AQ6UXS0 136 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 EIF4E3Q8N5X7 224 aaKnown RBP16.81■□□□□ 0.28
SMC4-221ENST00000489573 OR51G1Q8NGK1 321 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 OR1B1Q8NGR6 318 aa16.81■□□□□ 0.28
SMC4-221ENST00000489573 ELOA3CA0A087WX78 387 aaPredicted RBP16.8■□□□□ 0.28
SMC4-221ENST00000489573 CLEC3BP05452 202 aa16.8■□□□□ 0.28
SMC4-221ENST00000489573 CRYBA1P05813 215 aa16.8■□□□□ 0.28
SMC4-221ENST00000489573 ORM2P19652 201 aa16.8■□□□□ 0.28
SMC4-221ENST00000489573 LYZP61626 148 aa16.8■□□□□ 0.28
SMC4-221ENST00000489573 PATE2Q6UY27 113 aa16.8■□□□□ 0.28
SMC4-221ENST00000489573 CHRDL1Q9BU40 450 aa16.8■□□□□ 0.28
SMC4-221ENST00000489573 MXRA5Q9NR99 2828 aa16.79■□□□□ 0.28
SMC4-221ENST00000489573 HYPMO75409 117 aa16.79■□□□□ 0.28
SMC4-221ENST00000489573 STAG3L2P0CL84 134 aa16.79■□□□□ 0.28
SMC4-221ENST00000489573 STAG3L3P0CL85 134 aa16.79■□□□□ 0.28
SMC4-221ENST00000489573 ADMP35318 185 aa16.79■□□□□ 0.28
SMC4-221ENST00000489573 TEX38Q6PEX7 206 aa16.79■□□□□ 0.28
SMC4-221ENST00000489573 C10orf99Q6UWK7 81 aa16.79■□□□□ 0.28
SMC4-221ENST00000489573 LCNL1Q6ZST4 164 aa16.79■□□□□ 0.28
SMC4-221ENST00000489573 MIR17HGQ75NE6 70 aa16.79■□□□□ 0.28
SMC4-221ENST00000489573 Q8WTZ3 238 aa16.79■□□□□ 0.28
SMC4-221ENST00000489573 TGOLN2O43493 480 aa16.78■□□□□ 0.28
SMC4-221ENST00000489573 ELANEP08246 267 aa16.78■□□□□ 0.28
SMC4-221ENST00000489573 FOXE3Q13461 319 aa16.78■□□□□ 0.28
SMC4-221ENST00000489573 FAM210AQ96ND0 272 aa16.78■□□□□ 0.28
SMC4-221ENST00000489573 OR2C1O95371 312 aa16.77■□□□□ 0.28
SMC4-221ENST00000489573 UQCC3Q6UW78 93 aa16.77■□□□□ 0.28
SMC4-221ENST00000489573 RNF125Q96EQ8 232 aa16.77■□□□□ 0.28
SMC4-221ENST00000489573 PBDC1Q9BVG4 233 aa16.77■□□□□ 0.28
SMC4-221ENST00000489573 TECRQ9NZ01 308 aaKnown RBP16.77■□□□□ 0.28
SMC4-221ENST00000489573 HIGD1AQ9Y241 93 aa16.77■□□□□ 0.28
SMC4-221ENST00000489573 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.77■□□□□ 0.27
SMC4-221ENST00000489573 WI2-2373I1.2A0A1W2PRP0 233 aa16.77■□□□□ 0.27
SMC4-221ENST00000489573 CXorf1O96002 111 aa16.77■□□□□ 0.27
SMC4-221ENST00000489573 IL4P05112 153 aa16.77■□□□□ 0.27
SMC4-221ENST00000489573 TAS2R45P59539 299 aa16.77■□□□□ 0.27
SMC4-221ENST00000489573 GUK1Q16774 197 aa16.77■□□□□ 0.27
SMC4-221ENST00000489573 ZNF600Q6ZNG1 722 aa16.77■□□□□ 0.27
SMC4-221ENST00000489573 ZNF491Q8N8L2 437 aa16.77■□□□□ 0.27
SMC4-221ENST00000489573 UHRF2Q96PU4 802 aa16.77■□□□□ 0.27
SMC4-221ENST00000489573 GNB4Q9HAV0 340 aa16.77■□□□□ 0.27
SMC4-221ENST00000489573 CRLF1O75462 422 aa16.76■□□□□ 0.27
SMC4-221ENST00000489573 IGHV3-11P01762 117 aa16.76■□□□□ 0.27
SMC4-221ENST00000489573 ARL14EPLP0DKL9 152 aa16.76■□□□□ 0.27
SMC4-221ENST00000489573 C8orf88P0DMB2 117 aa16.76■□□□□ 0.27
SMC4-221ENST00000489573 KHDC3LQ587J8 217 aa16.76■□□□□ 0.27
SMC4-221ENST00000489573 TOR2AQ5JU69 321 aa16.76■□□□□ 0.27
SMC4-221ENST00000489573 ZNF343Q6P1L6 599 aa16.76■□□□□ 0.27
SMC4-221ENST00000489573 LINC00305Q7Z4B0 112 aa16.76■□□□□ 0.27
SMC4-221ENST00000489573 IQCF2Q8IXL9 164 aa16.76■□□□□ 0.27
SMC4-221ENST00000489573 GNG13Q9P2W3 67 aa16.76■□□□□ 0.27
SMC4-221ENST00000489573 MORN5Q5VZ52 161 aa16.75■□□□□ 0.27
SMC4-221ENST00000489573 TMPRSS5Q9H3S3 457 aa16.75■□□□□ 0.27
SMC4-221ENST00000489573 MRPL27Q9P0M9 148 aaKnown RBP16.75■□□□□ 0.27
SMC4-221ENST00000489573 PUS1Q9Y606 427 aaKnown RBP eCLIP16.75■□□□□ 0.27
SMC4-221ENST00000489573 IFNA1P01562 189 aa16.74■□□□□ 0.27
SMC4-221ENST00000489573 ARL3P36405 182 aa16.74■□□□□ 0.27
SMC4-221ENST00000489573 PSMB3P49720 205 aa16.74■□□□□ 0.27
SMC4-221ENST00000489573 SRSF3P84103 164 aaKnown RBP16.74■□□□□ 0.27
SMC4-221ENST00000489573 RELQ04864 619 aaPredicted RBP16.74■□□□□ 0.27
SMC4-221ENST00000489573 PMS2P11Q13670 270 aa16.74■□□□□ 0.27
SMC4-221ENST00000489573 RNF152Q8N8N0 203 aa16.74■□□□□ 0.27
SMC4-221ENST00000489573 OR4X2Q8NGF9 303 aa16.74■□□□□ 0.27
SMC4-221ENST00000489573 MYOZ3Q8TDC0 251 aa16.74■□□□□ 0.27
SMC4-221ENST00000489573 SCRT1Q9BWW7 348 aa16.74■□□□□ 0.27
SMC4-221ENST00000489573 EIF5A2Q9GZV4 153 aaKnown RBP16.74■□□□□ 0.27
SMC4-221ENST00000489573 TMEM231Q9H6L2 316 aa16.74■□□□□ 0.27
SMC4-221ENST00000489573 SETD2Q9BYW2 2564 aaPredicted RBP16.74■□□□□ 0.27
SMC4-221ENST00000489573 NF1P21359 2839 aa16.74■□□□□ 0.27
SMC4-221ENST00000489573 RBFOX3A6NFN3 312 aa16.73■□□□□ 0.27
SMC4-221ENST00000489573 PPP5D1E7EU14 171 aa16.73■□□□□ 0.27
SMC4-221ENST00000489573 RPLP1P05386 114 aaKnown RBP16.73■□□□□ 0.27
SMC4-221ENST00000489573 KIAA0141Q14154 515 aaPredicted RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms