RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 LINC00477Q96M19 166 aa8.71□□□□□ -1.01
SRGAP3-207ENST00000485983 RNASE7Q9H1E1 156 aaKnown RBP8.71□□□□□ -1.01
SRGAP3-207ENST00000485983 SRP19P09132 144 aaKnown RBP8.71□□□□□ -1.01
SRGAP3-207ENST00000485983 INS-IGF2F8WCM5 200 aa8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 CCL1P22362 96 aa8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 OR10W1Q8NGF6 305 aa8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 MS4A6AQ9H2W1 248 aa8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 OSTCQ9NRP0 149 aa8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 MSMBP08118 114 aa8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 IGFBP3P17936 291 aaPredicted RBP8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 EVI2AP22794 236 aa8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 FXYD7P58549 80 aa8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 ARHGEF17Q96PE2 2063 aaPredicted RBP8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 ZNF138P52744 262 aa8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 SS18Q15532 418 aa8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 SPOCK3Q9BQ16 436 aa8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 ZFC3H1O60293 1989 aaKnown RBP8.71□□□□□ -1.02
SRGAP3-207ENST00000485983 RGPD3A6NKT7 1758 aaPredicted RBP8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 MBD3L4A6NDZ8 208 aaPredicted RBP8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 MBD3L3A6NE82 208 aaPredicted RBP8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 MBD3L5A6NJ08 208 aaPredicted RBP8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 CTAG1AP78358 180 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 LCN12Q6JVE5 192 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 MBD3L2Q8NHZ7 208 aaPredicted RBP8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 LYZL4Q96KX0 146 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 MCRIP2Q9BUT9 160 aaKnown RBP8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 PRDM13Q9H4Q3 707 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 PMS2P5A8MQ11 134 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 ERCC8Q13216 396 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 FAM19A2Q8N3H0 131 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 GATD1Q8NB37 220 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 TET1Q8NFU7 2136 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 COL6A6A6NMZ7 2263 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 ERVH48-1M5A8F1 160 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 C18orf12Q96KH6 178 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 ALPK2Q86TB3 2170 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 TRAV8-2A0A0B4J237 113 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 PSG1P11464 419 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 TMEM155Q4W5P6 130 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 TEX43Q6ZNM6 134 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 Q96MF0 132 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 LAMTOR3Q9UHA4 124 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 SPCS1Q9Y6A9 102 aa8.7□□□□□ -1.02
SRGAP3-207ENST00000485983 IGKV2-40A0A087WW87 121 aaPredicted RBP8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 PGPEP1LA6NFU8 196 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 M0R2P5 195 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 IGKV2D-40P01614 121 aaPredicted RBP8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 GZMBP10144 247 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 RPL32P62910 135 aaKnown RBP8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 EFNB3Q15768 340 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 C10orf55Q5SWW7 151 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 ST6GALNAC6Q969X2 333 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 SELLP14151 372 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 RHPN1-AS1Q9BWJ2 59 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 FBLN5Q9UBX5 448 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 ANAPC10Q9UM13 185 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 IGHV3-64A0A075B6Q5 118 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 K7ENP7 123 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 DAD1P61803 113 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 SLC25A48Q6ZT89 311 aaKnown RBP8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 GGNQ86UU5 652 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 FGFBP3Q8TAT2 258 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 C1orf159Q96HA4 380 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 SSBP4Q9BWG4 385 aaPredicted RBP8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 SDK2Q58EX2 2172 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 BUB1B-PAK6H3BSN5 160 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 CD55P08174 381 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 CGB3P0DN86 165 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 NDPQ00604 133 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 ATXN8Q156A1 80 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 CD300EQ496F6 205 aaPredicted RBP8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 NHLRC3Q5JS37 347 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 ATP5L2Q7Z4Y8 100 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 C5orf30Q96GV9 206 aa8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 SLC25A39Q9BZJ4 359 aaPredicted RBP8.69□□□□□ -1.02
SRGAP3-207ENST00000485983 IGKV1-9A0A0C4DH69 117 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 F5H768 121 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 AMBPP02760 352 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 GATA4P43694 442 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 SYNJ2BPP57105 145 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 WDR83OSQ9Y284 106 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 SCN2AQ99250 2005 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 TMEM238C9JI98 176 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 IGKCP01834 107 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 SAA4P35542 130 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 LAGE3Q14657 143 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 Q5BKY6 102 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 MDS2Q8NDY4 140 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 FAM110DQ8TAY7 271 aaPredicted RBP8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 PLEKHB2Q96CS7 222 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 VCYO14598 125 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 CGB7P0DN87 165 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 CRYGSP22914 178 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 FOXG1P55316 489 aaPredicted RBP8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 RPL23P62829 140 aaKnown RBP8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 DAZ1Q9NQZ3 744 aaKnown RBP8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 RALGAPA1Q6GYQ0 2036 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 COL8A2P25067 703 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 LINC01559Q495D7 138 aa8.68□□□□□ -1.02
SRGAP3-207ENST00000485983 LTBP1Q14766 1721 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms