RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 KRTAP17-1Q9BYP8 105 aa6.36□□□□□ -1.39
USP4-210ENST00000483212 GNB4Q9HAV0 340 aa6.36□□□□□ -1.39
USP4-210ENST00000483212 KCNIP2Q9NS61 270 aa6.36□□□□□ -1.39
USP4-210ENST00000483212 RPRMQ9NS64 109 aa6.36□□□□□ -1.39
USP4-210ENST00000483212 NIPBLQ6KC79 2804 aaeCLIP6.36□□□□□ -1.39
USP4-210ENST00000483212 C2CD3Q4AC94 2353 aa6.36□□□□□ -1.39
USP4-210ENST00000483212 WI2-2373I1.2A0A1W2PRP0 233 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 SEC14L6B5MCN3 397 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 UMAD1C9J7I0 102 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 PPP5D1E7EU14 171 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 I3L521 148 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 BMPR1BO00238 502 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 OR2C1O95371 312 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 TSPAN15O95858 294 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 LGALS1P09382 135 aaKnown RBP6.35□□□□□ -1.39
USP4-210ENST00000483212 M6PRP20645 277 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 FHITP49789 147 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 RAB5CP51148 216 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 KRTAP10-3P60369 221 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 RAB31Q13636 194 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 TMEM41BQ5BJD5 291 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 CLLU1Q5K131 121 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 DPPA3Q6W0C5 159 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 C18orf65Q6ZTR6 163 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 SSX7Q7RTT5 188 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 RPP25LQ8N5L8 163 aaKnown RBP6.35□□□□□ -1.39
USP4-210ENST00000483212 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.35□□□□□ -1.39
USP4-210ENST00000483212 ZNF709Q8N972 641 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 OR4X2Q8NGF9 303 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 RNF141Q8WVD5 230 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 PCNPQ8WW12 178 aaKnown RBP6.35□□□□□ -1.39
USP4-210ENST00000483212 TMEM37Q8WXS4 190 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 ZFAND3Q9H8U3 227 aa6.35□□□□□ -1.39
USP4-210ENST00000483212 GAR1Q9NY12 217 aaKnown RBP6.35□□□□□ -1.39
USP4-210ENST00000483212 MBP02144 154 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 OR5G3P0C626 314 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 RD3LP0DJH9 198 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 CD28P10747 220 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 CDX1P47902 265 aaPredicted RBP6.34□□□□□ -1.39
USP4-210ENST00000483212 ZNF616Q08AN1 781 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 USF2Q15853 346 aaPredicted RBP6.34□□□□□ -1.39
USP4-210ENST00000483212 ACOT6Q3I5F7 207 aaPredicted RBP6.34□□□□□ -1.39
USP4-210ENST00000483212 AKR1C8PQ5T2L2 129 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 SPATA31B1PQ5VZV4 182 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 HIST2H2BDQ6DRA6 164 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 SPSB3Q6PJ21 355 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 ZNF600Q6ZNG1 722 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 Q6ZRG5 221 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 PRIMA1Q86XR5 153 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 OR10G4Q8NGN3 311 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 OR10G9Q8NGN4 311 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 OR10G7Q8NGN6 311 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 LYPD6BQ8NI32 183 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 WFDC12Q8WWY7 111 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 SAT2Q96F10 170 aaPredicted RBP6.34□□□□□ -1.39
USP4-210ENST00000483212 RCC1LQ96I51 464 aaKnown RBP6.34□□□□□ -1.39
USP4-210ENST00000483212 MRPL27Q9P0M9 148 aaKnown RBP6.34□□□□□ -1.39
USP4-210ENST00000483212 RNF114Q9Y508 228 aa6.34□□□□□ -1.39
USP4-210ENST00000483212 ANKRD34BA5PLL1 514 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 ADARB2-AS1A8MUL3 147 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 ZNF705EA8MWA4 302 aaPredicted RBP6.33□□□□□ -1.4
USP4-210ENST00000483212 NUPL2O15504 423 aaKnown RBP6.33□□□□□ -1.4
USP4-210ENST00000483212 EIF3GO75821 320 aaKnown RBP eCLIP6.33□□□□□ -1.4
USP4-210ENST00000483212 FABP1P07148 127 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 ARL3P36405 182 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 FAM209BQ5JX69 171 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 PXDC1Q5TGL8 231 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 MORN5Q5VZ52 161 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 FAM122CQ6P4D5 195 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 TOMM20LQ6UXN7 152 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 OR51G1Q8NGK1 321 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 FAM213BQ8TBF2 198 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 LRRC20Q8TCA0 184 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 GATAD1Q8WUU5 269 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 MBD3L1Q8WWY6 194 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 RNF125Q96EQ8 232 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 OR5B12Q96R08 314 aa6.33□□□□□ -1.4
USP4-210ENST00000483212 SEPSECSQ9HD40 501 aaKnown RBP6.33□□□□□ -1.4
USP4-210ENST00000483212 PEF1Q9UBV8 284 aaKnown RBP6.33□□□□□ -1.4
USP4-210ENST00000483212 PUS1Q9Y606 427 aaKnown RBP eCLIP6.33□□□□□ -1.4
USP4-210ENST00000483212 IGHV4OR15-8A0A075B7B6 117 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 A0A087WW49 117 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 TRAV1-1A0A0B4J248 108 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 IGHV3-35A0A0C4DH35 117 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 CTXND1A0A1B0GTU2 59 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 A0A1B0GUS0 222 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 GGCTO75223 188 aaKnown RBP6.32□□□□□ -1.4
USP4-210ENST00000483212 SCGB2A1O75556 95 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 IL4P05112 153 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 CDC34P49427 236 aaPredicted RBP6.32□□□□□ -1.4
USP4-210ENST00000483212 LYZP61626 148 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 RELQ04864 619 aaPredicted RBP6.32□□□□□ -1.4
USP4-210ENST00000483212 KRTAP24-1Q3LI83 254 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 UNQ9165/PRO28630Q6UXU0 137 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 MIR17HGQ75NE6 70 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 OR1L4Q8NGR5 311 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 Q8WTZ3 238 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 C4orf3Q8WVX3 66 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 RAB24Q969Q5 203 aa6.32□□□□□ -1.4
USP4-210ENST00000483212 ZNF503Q96F45 646 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms