RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PRCDQ00LT1 54 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 MSMO1Q15800 293 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 PLAC9Q5JTB6 97 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 C16orf54Q6UWD8 224 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 SIGLEC15Q6ZMC9 328 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 TMED4Q7Z7H5 227 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 CROCCP3Q8IVE0 287 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 SPAG16Q8N0X2 631 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 OR56B1Q8NGI3 324 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 CIRBP-AS1Q8TBR5 109 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 TMEM230Q96A57 120 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 RAB3CQ96E17 227 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 PAXXQ9BUH6 204 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 HINT2Q9BX68 163 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 PFDN2Q9UHV9 154 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 DAPK2Q9UIK4 370 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 SPATA2Q9UM82 520 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 OR2W1Q9Y3N9 320 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 ICOSQ9Y6W8 199 aa5.36□□□□□ -1.55
USP54-211ENST00000474929 A0A1B0GU03 582 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 PLAC8L1A1L4L8 177 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 METTL21EPA6NDL7 271 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 FOXI3A8MTJ6 420 aaPredicted RBP5.35□□□□□ -1.55
USP54-211ENST00000474929 NOTOA8MTQ0 251 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 HLA-DQB1P01920 261 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 HOXA5P20719 270 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 TGFBR1P36897 503 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 TAS2R60P59551 318 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 ODF1Q14990 250 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 CNPY1Q3B7I2 92 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 IDNKQ5T6J7 187 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 GDF5OSQ5U4N7 250 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 Q6ZS49 121 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 OR10R2Q8NGX6 335 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 TMEM263Q8WUH6 116 aaKnown RBP5.35□□□□□ -1.55
USP54-211ENST00000474929 MAFIPQ8WZ33 124 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 PINX1Q96BK5 328 aaKnown RBP5.35□□□□□ -1.55
USP54-211ENST00000474929 DAZAP1Q96EP5 407 aaKnown RBP5.35□□□□□ -1.55
USP54-211ENST00000474929 PLEKHA2Q9HB19 425 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 ELF5Q9UKW6 265 aaPredicted RBP5.35□□□□□ -1.55
USP54-211ENST00000474929 PRNDQ9UKY0 176 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 KCNK7Q9Y2U2 307 aa5.35□□□□□ -1.55
USP54-211ENST00000474929 TRAV30A0A087WSZ9 112 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 TEX50A0A1B0GTY4 177 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 MFNGO00587 321 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 SNAPC5O75971 98 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 RLN2P04090 185 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 CRYGDP07320 174 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 RAB6AP20340 208 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 TALDO1P37837 337 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 HNRNPA3P51991 378 aaKnown RBP5.34□□□□□ -1.55
USP54-211ENST00000474929 CDNFQ49AH0 187 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 FAM78BQ5VT40 261 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 TMEM144Q7Z5S9 345 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 GPR141Q7Z602 305 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 OR5H6Q8NGV6 325 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 YIPF6Q96EC8 236 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 BCL7BQ9BQE9 202 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 RBM38Q9H0Z9 239 aaKnown RBP5.34□□□□□ -1.55
USP54-211ENST00000474929 RPRMQ9NS64 109 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 TAS2R8Q9NYW2 309 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 DOK5Q9P104 306 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 OR51B2Q9Y5P1 312 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 U3KQE9 123 aa5.34□□□□□ -1.55
USP54-211ENST00000474929 A0A0J9YX75 114 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 MARCH11A6NNE9 402 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 A8MTW9 85 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 TMEM50AO95807 157 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 FCER2P06734 321 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 SMIM18P0DKX4 95 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 HIST1H1DP16402 221 aaKnown RBP5.33□□□□□ -1.56
USP54-211ENST00000474929 RPS19P39019 145 aaKnown RBP5.33□□□□□ -1.56
USP54-211ENST00000474929 EIF4EBP1Q13541 118 aaPredicted RBP5.33□□□□□ -1.56
USP54-211ENST00000474929 FCN2Q15485 313 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 LINC00612Q8N6U2 182 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 ZBTB34Q8NCN2 500 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 LGALS14Q8TCE9 139 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 LINC00052Q96N35 136 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 TM2D2Q9BX73 214 aa5.33□□□□□ -1.56
USP54-211ENST00000474929 NOP10Q9NPE3 64 aaKnown RBP5.33□□□□□ -1.56
USP54-211ENST00000474929 TRAV18A0A075B6X5 111 aa5.32□□□□□ -1.56
USP54-211ENST00000474929 IGKV1D-8A0A087WSZ0 117 aa5.32□□□□□ -1.56
USP54-211ENST00000474929 ISLRO14498 428 aa5.32□□□□□ -1.56
USP54-211ENST00000474929 CLN5O75503 358 aa5.32□□□□□ -1.56
USP54-211ENST00000474929 DUSP14O95147 198 aaKnown RBP5.32□□□□□ -1.56
USP54-211ENST00000474929 BRWD1-AS2P59051 145 aa5.32□□□□□ -1.56
USP54-211ENST00000474929 NCS1P62166 190 aa5.32□□□□□ -1.56
USP54-211ENST00000474929 MORN5Q5VZ52 161 aa5.32□□□□□ -1.56
USP54-211ENST00000474929 BORCS5Q969J3 196 aa5.32□□□□□ -1.56
USP54-211ENST00000474929 FUNDC2Q9BWH2 189 aa5.32□□□□□ -1.56
USP54-211ENST00000474929 RHBDL2Q9NX52 303 aa5.32□□□□□ -1.56
USP54-211ENST00000474929 RSL24D1Q9UHA3 163 aaKnown RBP5.32□□□□□ -1.56
USP54-211ENST00000474929 TMEM235A6NFC5 223 aa5.31□□□□□ -1.56
USP54-211ENST00000474929 C9JCJ5 164 aa5.31□□□□□ -1.56
USP54-211ENST00000474929 IGLV2-14P01704 120 aa5.31□□□□□ -1.56
USP54-211ENST00000474929 PTHLHP12272 177 aa5.31□□□□□ -1.56
USP54-211ENST00000474929 MEOX2P50222 304 aa5.31□□□□□ -1.56
USP54-211ENST00000474929 PPP5CP53041 499 aa5.31□□□□□ -1.56
USP54-211ENST00000474929 GNG2P59768 71 aa5.31□□□□□ -1.56
USP54-211ENST00000474929 VBP1P61758 197 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms