RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	NR2C2AP	Q86WQ0	139 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	SIGLECL1	Q8N7X8	197 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	SMRP1	Q8NCR6	262 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	OR9G1	Q8NH87	305 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	PHLDA1	Q8WV24	401 aa	Predicted RBP	2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	RBMXL1	Q96E39	390 aa	Known RBP	2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	SPANXD	Q9BXN6	97 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	ADGRB1	O14514	1584 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	UBR1	Q8IWV7	1749 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	PLXNB1	O43157	2135 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	SLX4	Q8IY92	1834 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426		H3BT86	120 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	ASAH2B	P0C7U1	165 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	RBMY1C	P0DJD4	496 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	DAP	P51397	102 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	SS18	Q15532	418 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	LGALS9B	Q3B8N2	356 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	MORN3	Q6PF18	240 aa	Predicted RBP	2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	KTN1-AS1	Q86SY8	53 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	PPP1R1C	Q8WVI7	109 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	KRTAP17-1	Q9BYP8	105 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	GNB4	Q9HAV0	340 aa		2.73	□□□□□ -1.97
UBR3-208	ENST00000474426	FER1L5	A0AVI2	2057 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	TRBV5-7	A0A0A0MS05	114 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	IGKV1D-43	A0A0B4J1Z2	117 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	TRAV8-2	A0A0B4J237	113 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	TRAV8-4	A0A0B4J246	113 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	FXYD1	O00168	92 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	PPP1R3D	O95685	299 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	ZAR1	Q86SH2	424 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	AQP10	Q96PS8	301 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	ODF3	Q96PU9	254 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	CLEC7A	Q9BXN2	247 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	ANKRD36	A6QL64	1941 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	DLC1	Q96QB1	1528 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	C4orf51	C9J302	202 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	INS-IGF2	F8WCM5	200 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	SNRPF	P62306	86 aa	Known RBP	2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	QRFP	P83859	136 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	FAM222A	Q5U5X8	452 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	FRG2	Q64ET8	278 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	LINC00337	Q8N6G1	96 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	RAB37	Q96AX2	223 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	RITA1	Q96K30	269 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	NMNAT3	Q96T66	252 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	hADV29S1	A0JD25	119 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	HOXB6	P17509	224 aa	Known RBP	2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	FAU	P35544	74 aa	Known RBP	2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	CSN1S1	P47710	185 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	LGALS9C	Q6DKI2	356 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	LINC00305	Q7Z4B0	112 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	OR10AC1	Q8NH08	325 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	MRPL30	Q8TCC3	161 aa	Known RBP	2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	SMIM4	Q8WVI0	70 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	UPK3B	Q9BT76	320 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	RABAC1	Q9UI14	185 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	ALS2	Q96Q42	1657 aa		2.72	□□□□□ -1.97
UBR3-208	ENST00000474426	IGKV1D-13	A0A0B4J2D9	117 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426		M0R378	163 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	ZNF324	O75467	553 aa	Predicted RBP	2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	C4A	P0C0L4	1744 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	C4B	P0C0L5	1744 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	IGKV1-13	P0DP09	117 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	COX6A1	P12074	109 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	TRNP1	Q6NT89	227 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	ZNF322	Q6U7Q0	402 aa	Predicted RBP	2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	TIFAB	Q6ZNK6	161 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	DDX60	Q8IY21	1712 aa	Known RBP	2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	DOCK9	Q9BZ29	2069 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	DOCK7	Q96N67	2140 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	QSER1	Q2KHR3	1735 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	SMIM26	A0A096LP01	95 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	TRAV41	A0A0B4J266	112 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426		A0A0G2JNJ9	132 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	TRBV5-5	A0A0J9YX44	114 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426		K7ESM1	405 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	SYNGR2	O43760	224 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	PIP	P12273	146 aa	Predicted RBP	2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	CD70	P32970	193 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	ZNF136	P52737	540 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	SNRPD3	P62318	126 aa	Known RBP	2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	ZNF816	Q0VGE8	651 aa	Predicted RBP	2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	SRSF9	Q13242	221 aa	Known RBP eCLIP	2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	WDR38	Q5JTN6	314 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	HLA-DQA1	Q5Y7H0	255 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	SMIM5	Q71RC9	77 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	TEN1	Q86WV5	123 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	OR8B2	Q96RD0	313 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	METTL26	Q96S19	204 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	RNF126	Q9BV68	326 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	CTSZ	Q9UBR2	303 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426		Q9UFV3	132 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	LAMTOR3	Q9UHA4	124 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	RALGAPA2	Q2PPJ7	1873 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	KIAA2026	Q5HYC2	2103 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	TRIP12	Q14669	1992 aa	Predicted RBP	2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	MDFIC2	A0A1B0GVS7	189 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426	FAM24A	A6NFZ4	105 aa		2.71	□□□□□ -1.98
UBR3-208	ENST00000474426		F2Z2F3	143 aa		2.71	□□□□□ -1.98

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms