RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 IQCJQ1A5X6 159 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 TEX38Q6PEX7 206 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 KLHDC1Q8N7A1 406 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 FMC1Q96HJ9 113 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 TRGV9Q99603 122 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 C12orf57Q99622 126 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 VAMP8Q9BV40 100 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 HLA-DQA1P01909 254 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 GNG5P63218 68 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 LDLRAD2Q5SZI1 272 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 BEX4Q9NWD9 120 aaPredicted RBP5.99□□□□□ -1.45
SYNE1-213ENST00000448038 PIEZO2Q9H5I5 2752 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 DOCK11Q5JSL3 2073 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 TGIF2-C20orf24A0A0A6YYL0 155 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 TRGC2P03986 189 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 SPSB3Q6PJ21 355 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 NUP210LQ5VU65 1888 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 TRBV7-1A0A0A6YYK4 115 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 CXorf65A6NEN9 183 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 MLANAQ16655 118 aa5.99□□□□□ -1.45
SYNE1-213ENST00000448038 A0A1W2PRE2 83 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 J3QLI3 93 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 CCL20P78556 96 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 SRSF8Q9BRL6 282 aaKnown RBP5.98□□□□□ -1.45
SYNE1-213ENST00000448038 FGF16O43320 207 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 TAS2R60P59551 318 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 DIAPH2-AS1Q14236 149 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 DAZAP2Q15038 168 aaPredicted RBP5.98□□□□□ -1.45
SYNE1-213ENST00000448038 GUSBP1Q15486 140 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 MBD3L1Q8WWY6 194 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 USMG5Q96IX5 58 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 TMEM14BQ9NUH8 114 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 NEU1Q99519 415 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 ATG101Q9BSB4 218 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 RFNGQ9Y644 331 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 ATP6V0E1O15342 81 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 RPL15P61313 204 aaKnown RBP5.98□□□□□ -1.45
SYNE1-213ENST00000448038 SPATA31B1PQ5VZV4 182 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 GLMPQ8WWB7 406 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 SCRT1Q9BWW7 348 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 SLC25A39Q9BZJ4 359 aaPredicted RBP5.98□□□□□ -1.45
SYNE1-213ENST00000448038 EPDR1Q9UM22 224 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 SLC17A3O00476 420 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 IGKV1-39P01597 117 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 IGKV1D-39P04432 117 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 Q6ZN92 141 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 PIP4P2Q8N4L2 257 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 MRPL18Q9H0U6 180 aaKnown RBP5.98□□□□□ -1.45
SYNE1-213ENST00000448038 SELENOKQ9Y6D0 94 aa5.98□□□□□ -1.45
SYNE1-213ENST00000448038 PMS2P5A8MQ11 134 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 A8MXK9 166 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 TRGC1P0CF51 173 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 FAM74A4Q5TZK3 123 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 SIGLEC15Q6ZMC9 328 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 RPP25LQ8N5L8 163 aaKnown RBP5.97□□□□□ -1.45
SYNE1-213ENST00000448038 EIF4E3Q8N5X7 224 aaKnown RBP5.97□□□□□ -1.45
SYNE1-213ENST00000448038 MAP1LC3CQ9BXW4 147 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 SEPSECSQ9HD40 501 aaKnown RBP5.97□□□□□ -1.45
SYNE1-213ENST00000448038 CEP350Q5VT06 3117 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 STAG3L2P0CL84 134 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 STAG3L3P0CL85 134 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 LYL1P12980 280 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 DEFB113Q30KQ7 82 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 CARHSP1Q9Y2V2 147 aaKnown RBP5.97□□□□□ -1.45
SYNE1-213ENST00000448038 IGHV4-61A0A0C4DH41 118 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 FAM223BA6NKX1 122 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 C9JCJ5 164 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 IGHV4-39P01824 125 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 ELOBQ15370 118 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 MSMPQ1L6U9 139 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 FAM223AQ8IWN6 122 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 MYOZ3Q8TDC0 251 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 NRGNQ92686 78 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 SPOCK3Q9BQ16 436 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 NDUFA4L2Q9NRX3 87 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 RNASE4P34096 147 aaKnown RBP5.97□□□□□ -1.45
SYNE1-213ENST00000448038 TCF24Q7RTU0 167 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 LYPD6Q86Y78 171 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 OR8A1Q8NGG7 326 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 SDF2L1Q9HCN8 221 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 NOTCH3Q9UM47 2321 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 IGHV4-30-2A0A087WSY4 118 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 FBLL1A6NHQ2 334 aaKnown RBP5.97□□□□□ -1.45
SYNE1-213ENST00000448038 SRSF3P84103 164 aaKnown RBP5.97□□□□□ -1.45
SYNE1-213ENST00000448038 KIAA1644Q3SXP7 199 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 C1orf122Q6ZSJ8 110 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 CIARTQ8N365 385 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-213ENST00000448038 HSPB8Q9UJY1 196 aa5.97□□□□□ -1.45
SYNE1-213ENST00000448038 KLHL30-AS1Q8NEE0 82 aa5.96□□□□□ -1.45
SYNE1-213ENST00000448038 PACRGQ96M98 296 aaPredicted RBP5.96□□□□□ -1.45
SYNE1-213ENST00000448038 DUX3Q96PT4 197 aa5.96□□□□□ -1.45
SYNE1-213ENST00000448038 TMEM191AQ9H0A3 160 aa5.96□□□□□ -1.45
SYNE1-213ENST00000448038 PTPN13Q12923 2485 aa5.96□□□□□ -1.45
SYNE1-213ENST00000448038 TNRC6AQ8NDV7 1962 aaKnown RBP5.96□□□□□ -1.46
SYNE1-213ENST00000448038 ZNF98A6NK75 572 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 ASIPP42127 132 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 G3V318 75 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 M0R381 172 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 LCNL1Q6ZST4 164 aa5.96□□□□□ -1.46
SYNE1-213ENST00000448038 Q71RC1 249 aaPredicted RBP5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 130.5 ms