RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 WFDC1Q9HC57 220 aa12.68□□□□□ -0.38
PTPRF-206ENST00000429895 M0R2P5 195 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 TRAV8-4A0A0B4J246 113 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 C5orf30Q96GV9 206 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 SLC25A39Q9BZJ4 359 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-206ENST00000429895 PLSCR4Q9NRQ2 329 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 PARP14Q460N5 1801 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 A0A087WWC5 75 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 A0A1W2PRE2 83 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 F2Z2F3 143 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 ATP5L2Q7Z4Y8 100 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 CD177Q8N6Q3 437 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 MAPK1IP1LQ8NDC0 245 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 TNFRSF14Q92956 283 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 CMC4P56277 68 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-206ENST00000429895 C20orf204Q6ZNR8 217 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 PTPRFP10586 1907 aa12.67□□□□□ -0.38
PTPRF-206ENST00000429895 LAGE3Q14657 143 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 GGNQ86UU5 652 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 TCRAP04437 139 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 IGKV1-12A0A0C4DH73 117 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 IGKV1D-12P01611 117 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 MEGF9Q9H1U4 602 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 OSTCQ9NRP0 149 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 INS-IGF2F8WCM5 200 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 INSP01308 110 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 RPL36AP83881 106 aaKnown RBP12.66□□□□□ -0.38
PTPRF-206ENST00000429895 RPL36ALQ969Q0 106 aaKnown RBP12.66□□□□□ -0.38
PTPRF-206ENST00000429895 LSM4Q9Y4Z0 139 aaKnown RBP12.66□□□□□ -0.38
PTPRF-206ENST00000429895 IGLV3-32A0A0A0MS00 114 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 TRAV3A0A0B4J244 114 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 MORN3Q6PF18 240 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-206ENST00000429895 DMRTC2Q8IXT2 367 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-206ENST00000429895 Q8TAT8 98 aa12.66□□□□□ -0.38
PTPRF-206ENST00000429895 RPUSD1Q9UJJ7 312 aaKnown RBP12.66□□□□□ -0.38
PTPRF-206ENST00000429895 TOMM40O96008 361 aa12.65□□□□□ -0.38
PTPRF-206ENST00000429895 DEFB130BP0DP73 79 aa12.65□□□□□ -0.38
PTPRF-206ENST00000429895 DEFB130AP0DP74 79 aa12.65□□□□□ -0.38
PTPRF-206ENST00000429895 PCP4P48539 62 aa12.65□□□□□ -0.38
PTPRF-206ENST00000429895 LAMTOR3Q9UHA4 124 aa12.65□□□□□ -0.38
PTPRF-206ENST00000429895 NR2C2APQ86WQ0 139 aa12.65□□□□□ -0.38
PTPRF-206ENST00000429895 TMEM170AQ8WVE7 144 aa12.65□□□□□ -0.38
PTPRF-206ENST00000429895 Q0VFX4 171 aa12.65□□□□□ -0.38
PTPRF-206ENST00000429895 TREML4Q6UXN2 200 aa12.65□□□□□ -0.39
PTPRF-206ENST00000429895 PPBPP02775 128 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 COL8A2P25067 703 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 ATRAIDQ6UW56 229 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 TSKUQ8WUA8 353 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 IFI27L1Q96BM0 104 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 D6R8Y8 96 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 EFNA2O43921 213 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 RNF223E7ERA6 249 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 RBBP6Q7Z6E9 1792 aaKnown RBP12.64□□□□□ -0.39
PTPRF-206ENST00000429895 TEX38Q6PEX7 206 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 Q71RC1 249 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-206ENST00000429895 C5orf24Q7Z6I8 188 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 C1orf159Q96HA4 380 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 LAMTOR2Q9Y2Q5 125 aa12.64□□□□□ -0.39
PTPRF-206ENST00000429895 SRRM5B3KS81 715 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 CRYGSP22914 178 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 LYZL1Q6UWQ5 148 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 LYPD3O95274 346 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 IL18BPO95998 194 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 PSPNO60542 156 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 RUSC1-AS1Q66K80 236 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 BPESC1Q9GZL8 116 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 MINOS1Q5TGZ0 78 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 MINOS1-NBL1R4GNA1 71 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 HEPN1Q6WQI6 88 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 LINC01356Q8N9X3 169 aa12.63□□□□□ -0.39
PTPRF-206ENST00000429895 TRBV7-1A0A0A6YYK4 115 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 FAM90A9PA6NNJ1 464 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 TEX43Q6ZNM6 134 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 IGKV1-27A0A075B6S5 117 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 ERCC8Q13216 396 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 ATXN8Q156A1 80 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 LYPD2Q6UXB3 125 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 ERG28Q9UKR5 140 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 TRAV13-1A0A0B4J241 112 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 A0A1B0GWJ7 208 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 SH2D1AO60880 128 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 HIST1H4AP62805 103 aaKnown RBP12.62□□□□□ -0.39
PTPRF-206ENST00000429895 CFHR3Q02985 330 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 C6orf226Q5I0X4 101 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 ABCA7Q8IZY2 2146 aa12.62□□□□□ -0.39
PTPRF-206ENST00000429895 A0A087WWL8 130 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 F8WEM9 126 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 BUB1B-PAK6H3BSN5 160 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 SP5Q6BEB4 398 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-206ENST00000429895 H0YIZ8 118 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 GAFA1Q96PS6 74 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 WDR83OSQ9Y284 106 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 GGTLC1Q9BX51 225 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 ZNF138P52744 262 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 SYNJ2BPP57105 145 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 SRSF4Q08170 494 aaKnown RBP12.61□□□□□ -0.39
PTPRF-206ENST00000429895 SLC25A48Q6ZT89 311 aaKnown RBP12.61□□□□□ -0.39
PTPRF-206ENST00000429895 TRAV9-2A0A087WT02 112 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 C5orf64Q2M2E5 130 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 MGST2Q99735 147 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms