RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 SSX7Q7RTT5 188 aa7.46□□□□□ -1.21
RIF1-202ENST00000414861 PRIMA1Q86XR5 153 aa7.46□□□□□ -1.21
RIF1-202ENST00000414861 COMMD1Q8N668 190 aa7.46□□□□□ -1.21
RIF1-202ENST00000414861 KCNIP2Q9NS61 270 aa7.46□□□□□ -1.21
RIF1-202ENST00000414861 TRAV30A0A087WSZ9 112 aa7.46□□□□□ -1.22
RIF1-202ENST00000414861 BMPR1BO00238 502 aa7.46□□□□□ -1.22
RIF1-202ENST00000414861 TOMM40O96008 361 aa7.46□□□□□ -1.22
RIF1-202ENST00000414861 RD3LP0DJH9 198 aa7.46□□□□□ -1.22
RIF1-202ENST00000414861 ARL3P36405 182 aa7.46□□□□□ -1.22
RIF1-202ENST00000414861 YPEL3P61236 119 aaPredicted RBP7.46□□□□□ -1.22
RIF1-202ENST00000414861 SELENOTP62341 195 aa7.46□□□□□ -1.22
RIF1-202ENST00000414861 TMEM41BQ5BJD5 291 aa7.46□□□□□ -1.22
RIF1-202ENST00000414861 RPP25LQ8N5L8 163 aaKnown RBP7.46□□□□□ -1.22
RIF1-202ENST00000414861 FAM213BQ8TBF2 198 aa7.46□□□□□ -1.22
RIF1-202ENST00000414861 UBE2E2Q96LR5 201 aa7.46□□□□□ -1.22
RIF1-202ENST00000414861 SLC25A22Q9H936 323 aa7.46□□□□□ -1.22
RIF1-202ENST00000414861 FBN1P35555 2871 aaKnown RBP7.45□□□□□ -1.22
RIF1-202ENST00000414861 ZNF705EA8MWA4 302 aaPredicted RBP7.45□□□□□ -1.22
RIF1-202ENST00000414861 NMBP08949 121 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 LGALS1P09382 135 aaKnown RBP7.45□□□□□ -1.22
RIF1-202ENST00000414861 M6PRP20645 277 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 KRTAP10-3P60369 221 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 LYZP61626 148 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 DEFB136Q30KP8 78 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 SPATA31B1PQ5VZV4 182 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 PATE2Q6UY27 113 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 TMEM37Q8WXS4 190 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 RCC1LQ96I51 464 aaKnown RBP7.45□□□□□ -1.22
RIF1-202ENST00000414861 PUS1Q9Y606 427 aaKnown RBP eCLIP7.45□□□□□ -1.22
RIF1-202ENST00000414861 UMAD1C9J7I0 102 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 IL4P05112 153 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 MORN5Q5VZ52 161 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 FAM122CQ6P4D5 195 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 SPSB3Q6PJ21 355 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 Q6ZRG5 221 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 OR51G1Q8NGK1 321 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 OR10G4Q8NGN3 311 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 OR10G9Q8NGN4 311 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 OR10G7Q8NGN6 311 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 RNF141Q8WVD5 230 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 UHRF2Q96PU4 802 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 ATP6V0BQ99437 205 aa7.45□□□□□ -1.22
RIF1-202ENST00000414861 CITED2Q99967 270 aaPredicted RBP7.45□□□□□ -1.22
RIF1-202ENST00000414861 SEPSECSQ9HD40 501 aaKnown RBP7.45□□□□□ -1.22
RIF1-202ENST00000414861 GAR1Q9NY12 217 aaKnown RBP7.45□□□□□ -1.22
RIF1-202ENST00000414861 I3L521 148 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 HMGB3O15347 200 aaKnown RBP7.44□□□□□ -1.22
RIF1-202ENST00000414861 ORM2P19652 201 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 USF2Q15853 346 aaPredicted RBP7.44□□□□□ -1.22
RIF1-202ENST00000414861 ACOT6Q3I5F7 207 aaPredicted RBP7.44□□□□□ -1.22
RIF1-202ENST00000414861 OR1B1Q8NGR6 318 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 RNF125Q96EQ8 232 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 PBDC1Q9BVG4 233 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 ZFAND3Q9H8U3 227 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 PEF1Q9UBV8 284 aaKnown RBP7.44□□□□□ -1.22
RIF1-202ENST00000414861 IGHV4OR15-8A0A075B7B6 117 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 A0A087WW49 117 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 A0A1B0GV50 99 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 WI2-2373I1.2A0A1W2PRP0 233 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 A0A1W2PRX2 142 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 OR2C1O95371 312 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 KRTAP24-1Q3LI83 254 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 TOMM20LQ6UXN7 152 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 UNQ9165/PRO28630Q6UXU0 137 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 ZNF600Q6ZNG1 722 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 KLHL30-AS1Q8NEE0 82 aa7.44□□□□□ -1.22
RIF1-202ENST00000414861 TEX46H3BTG2 121 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 COX7A2P2O60397 106 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 SCGB2A1O75556 95 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 OR5G3P0C626 314 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 CDX1P47902 265 aaPredicted RBP7.43□□□□□ -1.22
RIF1-202ENST00000414861 RAB5CP51148 216 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 PLP1P60201 277 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 PXDC1Q5TGL8 231 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 MIR17HGQ75NE6 70 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 C4orf3Q8WVX3 66 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 WFDC12Q8WWY7 111 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 DUX3Q96PT4 197 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 SEC14L6B5MCN3 397 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 MBP02144 154 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 FABP1P07148 127 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 CDC34P49427 236 aaPredicted RBP7.43□□□□□ -1.22
RIF1-202ENST00000414861 FAM78BQ5VT40 261 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 C8orf86Q6ZUL3 223 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 Q8WTZ3 238 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 RAB24Q969Q5 203 aa7.43□□□□□ -1.22
RIF1-202ENST00000414861 ZNF207O43670 478 aaKnown RBP7.42□□□□□ -1.22
RIF1-202ENST00000414861 GGCTO75223 188 aaKnown RBP7.42□□□□□ -1.22
RIF1-202ENST00000414861 HYPMO75409 117 aa7.42□□□□□ -1.22
RIF1-202ENST00000414861 FGF8P55075 233 aaPredicted RBP7.42□□□□□ -1.22
RIF1-202ENST00000414861 RELQ04864 619 aaPredicted RBP7.42□□□□□ -1.22
RIF1-202ENST00000414861 FAM209BQ5JX69 171 aa7.42□□□□□ -1.22
RIF1-202ENST00000414861 CLLU1Q5K131 121 aa7.42□□□□□ -1.22
RIF1-202ENST00000414861 C10orf113Q5VZT2 155 aa7.42□□□□□ -1.22
RIF1-202ENST00000414861 LEMD1Q68G75 181 aa7.42□□□□□ -1.22
RIF1-202ENST00000414861 LCN15Q6UWW0 184 aa7.42□□□□□ -1.22
RIF1-202ENST00000414861 DPPA3Q6W0C5 159 aa7.42□□□□□ -1.22
RIF1-202ENST00000414861 DNAJC4Q9NNZ3 241 aa7.42□□□□□ -1.22
RIF1-202ENST00000414861 TRAV5A0A0B4J249 113 aa7.42□□□□□ -1.22
RIF1-202ENST00000414861 ADARB2-AS1A8MUL3 147 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms