RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 TCTE3Q8IZS6 198 aa2.64□□□□□ -1.99
BRCA1-204ENST00000412061 PFN4Q8NHR9 129 aa2.64□□□□□ -1.99
BRCA1-204ENST00000412061 ADAT1Q9BUB4 502 aaKnown RBP2.64□□□□□ -1.99
BRCA1-204ENST00000412061 SMIM3Q9BZL3 60 aa2.64□□□□□ -1.99
BRCA1-204ENST00000412061 TIMM9Q9Y5J7 89 aa2.64□□□□□ -1.99
BRCA1-204ENST00000412061 NCAPD3P42695 1498 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 A0A1B0GV90 55 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 CCDC160A6NGH7 325 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 C3orf84H3BNL1 204 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 K7EP13 123 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 GNRH2O43555 120 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 NDUFB3O43676 98 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 SYNGR2O43760 224 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 PGLYRP1O75594 196 aaPredicted RBP2.63□□□□□ -1.99
BRCA1-204ENST00000412061 SULT1C4O75897 302 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 SCTP09683 121 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 HIST1H1AQ02539 215 aaPredicted RBP2.63□□□□□ -1.99
BRCA1-204ENST00000412061 AMMECR1LQ6DCA0 310 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 C4orf22Q6V702 233 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 DYNAPQ8N1N2 210 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 TCEAL2Q9H3H9 227 aaPredicted RBP2.63□□□□□ -1.99
BRCA1-204ENST00000412061 FAM215AQ9Y5M1 114 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 R4GN34 69 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 U3KQ87 197 aa2.63□□□□□ -1.99
BRCA1-204ENST00000412061 FER1L6Q2WGJ9 1857 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 SLX4Q8IY92 1834 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 CEP164Q9UPV0 1460 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 TRAV7A0A075B6U4 112 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 TRGV10A0A0A0MS01 117 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 LOC107984640A0A0U1RRK4 108 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 MEIS3P1A6NDR6 274 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 K7ERJ3 54 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 CPSF4O95639 269 aaKnown RBP2.62□□□□□ -1.99
BRCA1-204ENST00000412061 ZNF14P17017 642 aaPredicted RBP2.62□□□□□ -1.99
BRCA1-204ENST00000412061 NFYAP23511 347 aaPredicted RBP2.62□□□□□ -1.99
BRCA1-204ENST00000412061 NDUFA6P56556 154 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 DPPA3Q6W0C5 159 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 SOSTDC1Q6X4U4 206 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 Q6ZS52 159 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 HMGN2P46Q86SG4 172 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 RNF182Q8N6D2 247 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 Q8NDZ9 215 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 TMEM106AQ96A25 262 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 LXNQ9BS40 222 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 NPCDR1Q9BY65 106 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 MRPL16Q9NX20 251 aaKnown RBP2.62□□□□□ -1.99
BRCA1-204ENST00000412061 EPDR1Q9UM22 224 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 TRAPPC8Q9Y2L5 1435 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 SCN9AQ15858 1988 aa2.62□□□□□ -1.99
BRCA1-204ENST00000412061 WDR7Q9Y4E6 1490 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 ARID1AO14497 2285 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 LINC00587B1AMM8 73 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 PSCAO43653 123 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 TCL1BO95988 128 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 HTR1AP08908 422 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 P0DMU3 169 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 FAM231AP0DMU4 169 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 FAM231CP0DMU5 169 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 DNAJB13P59910 316 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 HBBP68871 147 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 EIF4EBP1Q13541 118 aaPredicted RBP2.61□□□□□ -1.99
BRCA1-204ENST00000412061 FAM27BQ5VT28 67 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 Q5XG85 94 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 LYZL1Q6UWQ5 148 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 LINC00305Q7Z4B0 112 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 SLC35E3Q7Z769 313 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 PDZD9Q8IXQ8 264 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 TEX29Q8N6K0 151 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 OR51A4Q8NGJ6 313 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 AP1S3Q96PC3 154 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 PRADC1Q9BSG0 188 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 HIGD2AQ9BW72 106 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 HSPE1-MOB4S4R3N1 261 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 PIK3C2AO00443 1686 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 SLIT3O75094 1523 aa2.61□□□□□ -1.99
BRCA1-204ENST00000412061 RIMBP3CA6NJZ7 1639 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 RIMBP3BA6NNM3 1639 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 RIMBP3Q9UFD9 1639 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 A2MP01023 1474 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 NUP98P52948 1817 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 CACNA1DQ01668 2161 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 A0A096LPI6 279 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 IGHV1-58A0A0C4DH39 117 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 A0A0J9YX75 114 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 H7C2G1 150 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 M0R2Z0 102 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 MT-ND4LP03901 98 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 S100A1P23297 94 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 RPL35P42766 123 aaKnown RBP2.6□□□□□ -1.99
BRCA1-204ENST00000412061 EBI3Q14213 229 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 EIF5AL1Q6IS14 154 aaKnown RBP2.6□□□□□ -1.99
BRCA1-204ENST00000412061 LRRC28Q86X40 367 aaPredicted RBP2.6□□□□□ -1.99
BRCA1-204ENST00000412061 BRK1Q8WUW1 75 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 ZNF714Q96N38 554 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 HHLA3Q9XRX5 114 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 SCN8AQ9UQD0 1980 aa2.6□□□□□ -1.99
BRCA1-204ENST00000412061 MALRD1Q5VYJ5 2156 aa2.59□□□□□ -1.99
BRCA1-204ENST00000412061 ARHGEF28Q8N1W1 1705 aaKnown RBP2.59□□□□□ -1.99
BRCA1-204ENST00000412061 TRBV7-6A0A0J9YX20 115 aa2.59□□□□□ -2
BRCA1-204ENST00000412061 TRBV10-2A0A0K0K1G8 114 aa2.59□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms