RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 LY6EQ16553 131 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 ANKRD29Q8N6D5 301 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 HCSTQ9UBK5 93 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 SPINK2P20155 84 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 SS18Q15532 418 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 UCNP55089 124 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 UBE2DNLQ8IWF7 75 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 ITLN1Q8WWA0 313 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 SLC25A39Q9BZJ4 359 aaPredicted RBP11.29□□□□□ -0.6
USP49-203ENST00000394253 PROB1E7EW31 1015 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 J3QW42 95 aa11.29□□□□□ -0.6
USP49-203ENST00000394253 IGHV3-66A0A0C4DH42 116 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 ATP5J2P56134 94 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 TRBV24-1A0A075B6N3 115 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 CMC4P56277 68 aaPredicted RBP11.28□□□□□ -0.6
USP49-203ENST00000394253 MRPL27Q9P0M9 148 aaKnown RBP11.28□□□□□ -0.6
USP49-203ENST00000394253 MRPL55Q7Z7F7 128 aaKnown RBP11.28□□□□□ -0.6
USP49-203ENST00000394253 PRIMA1Q86XR5 153 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 YBX2Q9Y2T7 364 aaKnown RBP11.28□□□□□ -0.6
USP49-203ENST00000394253 PDLIM4P50479 330 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 BAALCQ8WXS3 180 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 GAGE12HA6NDE8 117 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 PTPRBP23467 1997 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 SIGLEC1Q9BZZ2 1709 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 D6R8Y8 96 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 ATP5G3P48201 142 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 MPV17L2Q567V2 206 aa11.28□□□□□ -0.6
USP49-203ENST00000394253 HAMPP81172 84 aa11.27□□□□□ -0.6
USP49-203ENST00000394253 TBX6O95947 436 aaPredicted RBP11.27□□□□□ -0.6
USP49-203ENST00000394253 IGHV3-49A0A0A0MS15 119 aa11.27□□□□□ -0.61
USP49-203ENST00000394253 NDUFS5O43920 106 aa11.27□□□□□ -0.61
USP49-203ENST00000394253 PGFP49763 221 aa11.27□□□□□ -0.61
USP49-203ENST00000394253 TCRBV4S1A1TA0A5B7 111 aa11.27□□□□□ -0.61
USP49-203ENST00000394253 CCL3P10147 92 aa11.27□□□□□ -0.61
USP49-203ENST00000394253 C16orf47Q6ZP98 133 aaPredicted RBP11.27□□□□□ -0.61
USP49-203ENST00000394253 B9A039 149 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 ZAR1Q86SH2 424 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 ZIC4Q8N9L1 334 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 ZNF721Q8TF20 911 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 RNF125Q96EQ8 232 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 COL22A1Q8NFW1 1626 aaPredicted RBP11.26□□□□□ -0.61
USP49-203ENST00000394253 RPL36AP83881 106 aaKnown RBP11.26□□□□□ -0.61
USP49-203ENST00000394253 RPL36ALQ969Q0 106 aaKnown RBP11.26□□□□□ -0.61
USP49-203ENST00000394253 IFITM3Q01628 133 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 UCP1P25874 307 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 BOD1L2Q8IYS8 172 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 ADAMTS9Q9P2N4 1935 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 IGHV3OR16-13A0A075B7E8 117 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 IGHV3-74A0A0B4J1X5 117 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 TEX38Q6PEX7 206 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 OVOL1O14753 267 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 NBL1P41271 181 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 SEC61GP60059 68 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 LDLRAD1Q5T700 205 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 NKAPP1Q8N9T2 125 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 IGHV3-35A0A0C4DH35 117 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 C9orf118A6NHY6 69 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 KLRD1Q13241 179 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 CD200R1LQ6Q8B3 271 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 SIGLEC15Q6ZMC9 328 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 KLF14Q8TD94 323 aaPredicted RBP11.26□□□□□ -0.61
USP49-203ENST00000394253 GPHA2Q96T91 129 aa11.26□□□□□ -0.61
USP49-203ENST00000394253 NOTCH4Q99466 2003 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 TRBV5-7A0A0A0MS05 114 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 TRAV13-1A0A0B4J241 112 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 C15orf61A6NNL5 157 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 IGKV1D-33P01593 117 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 IGKV1-33P01594 117 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 FOXG1P55316 489 aaPredicted RBP11.25□□□□□ -0.61
USP49-203ENST00000394253 TTTY12Q9BZ98 90 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 AZU1P20160 251 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 DPM3Q9P2X0 92 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 FOXL2P58012 376 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 C1QTNF4Q9BXJ3 329 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 MIR17HGQ75NE6 70 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 LOC102723996A0A087X1L8 192 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 SLAQ13239 276 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 CLEC19AQ6UXS0 136 aa11.25□□□□□ -0.61
USP49-203ENST00000394253 UPK3AO75631 287 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 IGHG2P01859 326 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 LEAP2Q969E1 77 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 FOXD3Q9UJU5 478 aaPredicted RBP11.24□□□□□ -0.61
USP49-203ENST00000394253 ATG2AQ2TAZ0 1938 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 COX14Q96I36 57 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 FAM90A1Q86YD7 464 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 FBLIM1Q8WUP2 373 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 NAA38Q9BRA0 125 aaKnown RBP11.24□□□□□ -0.61
USP49-203ENST00000394253 KNCNA6PVL3 124 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 SMAD7O15105 426 aaKnown RBP11.24□□□□□ -0.61
USP49-203ENST00000394253 ZIC1Q15915 447 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 LY6G5BQ8NDX9 201 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 A0A1W2PPV9 198 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 ACYP1P07311 99 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 CEACAM1P13688 526 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 RPL39P5Q59GN2 51 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 C9orf40Q8IXQ3 194 aa11.24□□□□□ -0.61
USP49-203ENST00000394253 TSSC4Q9Y5U2 329 aaPredicted RBP11.24□□□□□ -0.61
USP49-203ENST00000394253 TRAV14DV4A0A0A6YYC5 116 aa11.23□□□□□ -0.61
USP49-203ENST00000394253 TRAV13-2A0A0B4J235 113 aa11.23□□□□□ -0.61
USP49-203ENST00000394253 LIMS1P48059 325 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms