RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SLC35E1Q96K37 410 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 C19orf24Q9BVV8 132 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 C2CD3Q4AC94 2353 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 NCBP2LA6PVI3 153 aaKnown RBP8.03□□□□□ -1.12
VPS53-202ENST00000389040 NBR2O15453 112 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 CD24P25063 80 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 ADIRFQ15847 76 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 PRSS8Q16651 343 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 SPATA31B1PQ5VZV4 182 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 CST9LP1Q5W188 147 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 ZNF343Q6P1L6 599 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 TMEM219Q86XT9 240 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 MMD2Q8IY49 270 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 C5orf56Q8N8D9 126 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 Q8WTZ3 238 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 RASL11BQ9BPW5 248 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 TXNDC17Q9BRA2 123 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 ZNF580Q9UK33 172 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 PRELID1Q9Y255 219 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 CLPSL1A2RUU4 121 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 MT-CO2P00403 227 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 CRYGBP07316 175 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 GCHFRP30047 84 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 OR10J1P30954 320 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 ATP5G3P48201 142 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 RPL23P62829 140 aaKnown RBP8.03□□□□□ -1.12
VPS53-202ENST00000389040 PSG5Q15238 335 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 MMDQ15546 238 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 MLANAQ16655 118 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 Q6ZSV7 163 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 MRPL41Q8IXM3 137 aaKnown RBP8.03□□□□□ -1.12
VPS53-202ENST00000389040 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.03□□□□□ -1.12
VPS53-202ENST00000389040 CTDSP1Q9GZU7 261 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 URGCP-MRPS24S4R325 110 aa8.03□□□□□ -1.12
VPS53-202ENST00000389040 F6UZH7 168 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 ACTL6BO94805 426 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 HLA-DRB1P01911 266 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 AMY1AP04745 511 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 CXCL1P09341 107 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 NPPCP23582 126 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 CNTFRP26992 372 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 RND2P52198 227 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 C5orf64Q2M2E5 130 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 FAM78BQ5VT40 261 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 C1QL4Q86Z23 238 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 Q8N9W7 124 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 OR51G1Q8NGK1 321 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 LINC01006Q8NI28 216 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 ACY3Q96HD9 319 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 FUT9Q9Y231 359 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 SIGLEC9Q9Y336 463 aa8.02□□□□□ -1.13
VPS53-202ENST00000389040 TGIF2-C20orf24A0A0A6YYL0 155 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 IGLC7A0M8Q6 106 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 CLN5O75503 358 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 IGHG2P01859 326 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 GATA2P23769 480 aaPredicted RBP8.01□□□□□ -1.13
VPS53-202ENST00000389040 RPL27AP46776 148 aaKnown RBP8.01□□□□□ -1.13
VPS53-202ENST00000389040 GNB1P62873 340 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 BLCAPP62952 87 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 KIAA0141Q14154 515 aaPredicted RBP8.01□□□□□ -1.13
VPS53-202ENST00000389040 TNXAQ16473 311 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 MIR17HGQ75NE6 70 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 ZNF114Q8NC26 417 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 ATRQ13535 2644 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 REG1AP05451 166 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 S100A6P06703 90 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 RPS10P46783 165 aaKnown RBP8.01□□□□□ -1.13
VPS53-202ENST00000389040 ZNF562Q6V9R5 426 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 PPP1R27Q86WC6 154 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 SPATA3Q8NHX4 192 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 FNDC4Q9H6D8 234 aaPredicted RBP8.01□□□□□ -1.13
VPS53-202ENST00000389040 ZNF702PQ9H963 129 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 DOK5Q9P104 306 aa8.01□□□□□ -1.13
VPS53-202ENST00000389040 METTL1Q9UBP6 276 aaKnown RBP8.01□□□□□ -1.13
VPS53-202ENST00000389040 YTHDF2Q9Y5A9 579 aaKnown RBP8.01□□□□□ -1.13
VPS53-202ENST00000389040 FBN1P35555 2871 aaKnown RBP8□□□□□ -1.13
VPS53-202ENST00000389040 NDUFB4O95168 129 aa8□□□□□ -1.13
VPS53-202ENST00000389040 IGF1P05019 195 aa8□□□□□ -1.13
VPS53-202ENST00000389040 OR5G3P0C626 314 aa8□□□□□ -1.13
VPS53-202ENST00000389040 PVRIGQ6DKI7 326 aa8□□□□□ -1.13
VPS53-202ENST00000389040 TMEM68Q96MH6 324 aa8□□□□□ -1.13
VPS53-202ENST00000389040 KRTAP3-3Q9BYR6 98 aa8□□□□□ -1.13
VPS53-202ENST00000389040 KRTAP3-2Q9BYR7 98 aa8□□□□□ -1.13
VPS53-202ENST00000389040 TECRQ9NZ01 308 aaKnown RBP8□□□□□ -1.13
VPS53-202ENST00000389040 RNF114Q9Y508 228 aa8□□□□□ -1.13
VPS53-202ENST00000389040 AP4M1O00189 453 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 AREGP15514 252 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 TAS2R45P59539 299 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 SNRPEP62304 92 aaKnown RBP7.99□□□□□ -1.13
VPS53-202ENST00000389040 PLGLAQ15195 96 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 THAP8Q8NA92 274 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 NPIPB3Q92617 1050 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 DERL1Q9BUN8 251 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 WNT10AQ9GZT5 417 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 TMEM167BQ9NRX6 74 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 ARL2-SNX15V9GYD0 113 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 SCO2A0A1W2PP80 73 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 TCRBV4S1A1TA0A5B7 111 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 C5orf52A6NGY3 159 aa7.99□□□□□ -1.13
VPS53-202ENST00000389040 PROK1P58294 105 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms