RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 PROK2Q9HC23 129 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 TMEM262E9PQX1 116 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 PLA2G2CQ5R387 149 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 SCGB3A1Q96QR1 104 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 IGHV3OR16-12A0A075B7B8 117 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 FOXI3A8MTJ6 420 aaPredicted RBP12.4□□□□□ -0.42
NPHP4-201ENST00000378156 NDUFS8O00217 210 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 TMEM50AO95807 157 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 RPP25LQ8N5L8 163 aaKnown RBP12.4□□□□□ -0.42
NPHP4-201ENST00000378156 RNF166Q96A37 237 aaPredicted RBP12.4□□□□□ -0.42
NPHP4-201ENST00000378156 SIGMAR1Q99720 223 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 MEGF9Q9H1U4 602 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 METRNQ9UJH8 293 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 FAM208BQ5VWN6 2430 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 A0A1B0GW64 132 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 H7C1H1 209 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 WDR83OSQ9Y284 106 aa12.4□□□□□ -0.42
NPHP4-201ENST00000378156 HIGD1CA8MV81 97 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 Q6ZRM9 215 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 TEX45Q8NA69 505 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 RAX2Q96IS3 184 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 LIME1Q9H400 295 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 IGHV3OR16-8A0A075B7F1 116 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 TMEM178BH3BS89 294 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 RSPO1Q2MKA7 263 aaPredicted RBP12.39□□□□□ -0.43
NPHP4-201ENST00000378156 FAM159AQ6UWV7 190 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 CD177Q8N6Q3 437 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 ST20Q9HBF5 79 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 LINC00614P0C842 121 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 UNQ6494/PRO21346Q6UXR6 183 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.39□□□□□ -0.43
NPHP4-201ENST00000378156 TIMM23O14925 209 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 TYMSP04818 313 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 LINC00205P59089 165 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 PRCDQ00LT1 54 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 ZNF56Q15929 161 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 LDLRAD2Q5SZI1 272 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 OR2K2Q8NGT1 345 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 ANAPC10Q9UM13 185 aa12.39□□□□□ -0.43
NPHP4-201ENST00000378156 Q6P435 159 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 CLEC19AQ6UXS0 136 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 MRAP2Q96G30 205 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 NUTF2P61970 127 aaKnown RBP12.38□□□□□ -0.43
NPHP4-201ENST00000378156 RRN3P1Q2M238 152 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 ORAOV1Q8WV07 137 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 SHANK1Q9Y566 2161 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 IGHV3-66A0A0C4DH42 116 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 IGKV3-15P01624 115 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 GFI1BQ5VTD9 330 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 DUX5Q96PT3 197 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 IGKV1-6A0A0C4DH72 117 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 A0A1W2PRE2 83 aa12.38□□□□□ -0.43
NPHP4-201ENST00000378156 MRPL52Q86TS9 123 aaKnown RBP12.38□□□□□ -0.43
NPHP4-201ENST00000378156 FAM90A9PA6NNJ1 464 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 DLEU1O43261 78 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 AMBPP02760 352 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 CD69Q07108 199 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 TRAV1-1A0A0B4J248 108 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 C1orf194Q5T5A4 169 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 NUP37Q8NFH4 326 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 EFNA4P52798 201 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 CHCHD1Q96BP2 118 aaKnown RBP12.37□□□□□ -0.43
NPHP4-201ENST00000378156 MS4A6AQ9H2W1 248 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 MLNRO43193 412 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 IGKV3-20P01619 116 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 NTF4P34130 210 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 FER1L6-AS1Q8NA97 138 aa12.37□□□□□ -0.43
NPHP4-201ENST00000378156 APOMO95445 188 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 TMEM200BQ69YZ2 307 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 ASIPP42127 132 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 SUMO2P61956 95 aaKnown RBP12.36□□□□□ -0.43
NPHP4-201ENST00000378156 Q6ZS49 121 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 RNASE7Q9H1E1 156 aaKnown RBP12.36□□□□□ -0.43
NPHP4-201ENST00000378156 ACACBO00763 2458 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 TRBV6-6A0A0A6YYG2 114 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 IGHV3-11P01762 117 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 TMEM14EPQ6UXP3 125 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 FAM74A4Q5TZK3 123 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 TREML4Q6UXN2 200 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 COLCA1Q6ZS62 124 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 LURAP1LQ8IV03 231 aa12.36□□□□□ -0.43
NPHP4-201ENST00000378156 K7ENP7 123 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 HBDP02042 147 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 PPBPP02775 128 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 RNASE1P07998 156 aaKnown RBP12.35□□□□□ -0.43
NPHP4-201ENST00000378156 GNLYP22749 145 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 EFNB3Q15768 340 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 TEX38Q6PEX7 206 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 OCC1Q8TAD7 63 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 FNDC4Q9H6D8 234 aaPredicted RBP12.35□□□□□ -0.43
NPHP4-201ENST00000378156 IGHV1-8P0DP01 117 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 HSD52Q0P140 79 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 NUDT11Q96G61 164 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 C2orf88Q9BSF0 95 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 OTORQ9NRC9 128 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 NHP2Q9NX24 153 aaKnown RBP12.35□□□□□ -0.43
NPHP4-201ENST00000378156 IGHV2-26A0A0B4J1V2 119 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 TRAV8-2A0A0B4J237 113 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 FOXL1Q12952 345 aa12.35□□□□□ -0.43
NPHP4-201ENST00000378156 COQ2Q96H96 371 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms