RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 HS3ST6Q96QI5 342 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 SLX1AQ9BQ83 275 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 PRO3102Q9H379 93 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 H3BVH4 76 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 ZNF383Q8NA42 475 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 PLXNA3P51805 1871 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 BIVMQ86UB2 503 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 TBL2Q9Y4P3 447 aaKnown RBP9.47□□□□□ -0.89
SYNE1-204ENST00000367248 SCO2A0A1W2PP80 73 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 NMSQ5H8A3 153 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 LINC00473A8K010 186 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 DIRC3C9JPN6 131 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 HBBP68871 147 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 TREML4Q6UXN2 200 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 SDF2L1Q9HCN8 221 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 ZFP30Q9Y2G7 519 aa9.47□□□□□ -0.89
SYNE1-204ENST00000367248 IFITM10A6NMD0 228 aa9.46□□□□□ -0.89
SYNE1-204ENST00000367248 GNG5P63218 68 aa9.46□□□□□ -0.89
SYNE1-204ENST00000367248 A0A1W2PRE2 83 aa9.46□□□□□ -0.89
SYNE1-204ENST00000367248 CRPP02741 224 aa9.46□□□□□ -0.89
SYNE1-204ENST00000367248 PYYP10082 97 aa9.46□□□□□ -0.89
SYNE1-204ENST00000367248 MALP21145 153 aa9.46□□□□□ -0.89
SYNE1-204ENST00000367248 LEPROTL1O95214 131 aa9.46□□□□□ -0.9
SYNE1-204ENST00000367248 FMC1Q96HJ9 113 aa9.46□□□□□ -0.9
SYNE1-204ENST00000367248 MBNL3Q9NUK0 354 aaKnown RBP9.46□□□□□ -0.9
SYNE1-204ENST00000367248 A0A1B0GWJ7 208 aa9.46□□□□□ -0.9
SYNE1-204ENST00000367248 ZNF503-AS2A6NEH8 195 aa9.46□□□□□ -0.9
SYNE1-204ENST00000367248 IGLV1-44P01699 117 aa9.46□□□□□ -0.9
SYNE1-204ENST00000367248 DEFB130BP0DP73 79 aa9.46□□□□□ -0.9
SYNE1-204ENST00000367248 DEFB130AP0DP74 79 aa9.46□□□□□ -0.9
SYNE1-204ENST00000367248 NTF4P34130 210 aa9.46□□□□□ -0.9
SYNE1-204ENST00000367248 H7C1H1 209 aa9.46□□□□□ -0.9
SYNE1-204ENST00000367248 HSPB9Q9BQS6 159 aa9.46□□□□□ -0.9
SYNE1-204ENST00000367248 TRAV3A0A0B4J244 114 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 IGFL2Q6UWQ7 119 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 VN1R17PQ8TDU5 208 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 DUSP14O95147 198 aaKnown RBP9.45□□□□□ -0.9
SYNE1-204ENST00000367248 SPG11Q96JI7 2443 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 IGLV3-9A0A075B6K5 115 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 HOXA3O43365 443 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-204ENST00000367248 SMIM6P0DI80 62 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 SIGLEC15Q6ZMC9 328 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 TRBV9A0A0B4J1U6 114 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 EFNB3Q15768 340 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 GCSAMLQ5JQS6 135 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 IGFL4Q6B9Z1 124 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 SOX21Q9Y651 276 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-204ENST00000367248 TECTAO75443 2155 aa9.45□□□□□ -0.9
SYNE1-204ENST00000367248 FCN3O75636 299 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 LMO1P25800 156 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 PAPPA-AS1Q5QFB9 102 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 C11orf68Q9H3H3 251 aaKnown RBP9.44□□□□□ -0.9
SYNE1-204ENST00000367248 ZMAT5Q9UDW3 170 aaKnown RBP9.44□□□□□ -0.9
SYNE1-204ENST00000367248 LYRM7Q5U5X0 104 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 ITGB1BP1O14713 200 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 C18orf15Q96N68 181 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 SIGLEC9Q9Y336 463 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 OR11H12B2RN74 326 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 SLC17A3O00476 420 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 PAX1P15863 534 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 GATA3P23771 443 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 FOXA3P55318 350 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-204ENST00000367248 HIST2H2BCQ6DN03 193 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 CHCHD5Q9BSY4 110 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 RPP21Q9H633 154 aaKnown RBP9.44□□□□□ -0.9
SYNE1-204ENST00000367248 NCOR2Q9Y618 2525 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 A0A1B0GUT8 65 aa9.44□□□□□ -0.9
SYNE1-204ENST00000367248 CARHSP1Q9Y2V2 147 aaKnown RBP9.44□□□□□ -0.9
SYNE1-204ENST00000367248 SOD3P08294 240 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 Q6AWC8 147 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 TMEM14EPQ6UXP3 125 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 C1orf147Q96MC9 270 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-204ENST00000367248 IFT22Q9H7X7 185 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 OVOL3O00110 214 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 WFDC1Q9HC57 220 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 TRGV1A0A0A0MS02 117 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 FABP5P3A8MUU1 101 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 CCL20P78556 96 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 GTF3C1Q12789 2109 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 REC114Q7Z4M0 266 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 KCNS1Q96KK3 526 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 EPDR1Q9UM22 224 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 GFI1BQ5VTD9 330 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 SPSB3Q6PJ21 355 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 ASCL2Q99929 193 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 F11RQ9Y624 299 aaKnown RBP9.43□□□□□ -0.9
SYNE1-204ENST00000367248 C7orf71A4D174 169 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 CFPP27918 469 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 RNF138Q8WVD3 245 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 PSG1P11464 419 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 SONP18583 2426 aaKnown RBP9.43□□□□□ -0.9
SYNE1-204ENST00000367248 CBLN1P23435 193 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 UBE2E1P51965 193 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 DUX4L9Q6RFH8 374 aaPredicted RBP9.43□□□□□ -0.9
SYNE1-204ENST00000367248 TMEM136Q6ZRR5 245 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 GGTLC1Q9BX51 225 aa9.43□□□□□ -0.9
SYNE1-204ENST00000367248 NCOR1P1Q9H4R4 102 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 IL36BQ9NZH7 164 aa9.42□□□□□ -0.9
SYNE1-204ENST00000367248 LOXP28300 417 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-204ENST00000367248 RSPO1Q2MKA7 263 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms