RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.16■□□□□ 0.02
SHANK1-202ENST00000359082 HIST1H2BHQ93079 126 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 HIST1H2BNQ99877 126 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 HIST1H2BMQ99879 126 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 PDCD11Q14690 1871 aaKnown RBP15.16■□□□□ 0.02
SHANK1-202ENST00000359082 VWCEQ96DN2 955 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 ZNF479Q96JC4 524 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 MORN3Q6PF18 240 aaPredicted RBP15.16■□□□□ 0.02
SHANK1-202ENST00000359082 TRGV1A0A0A0MS02 117 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 SPACA3Q8IXA5 215 aa15.16■□□□□ 0.02
SHANK1-202ENST00000359082 FAM90A9PA6NNJ1 464 aa15.15■□□□□ 0.02
SHANK1-202ENST00000359082 TEX38Q6PEX7 206 aa15.15■□□□□ 0.02
SHANK1-202ENST00000359082 MAP1BP46821 2468 aaKnown RBP15.15■□□□□ 0.02
SHANK1-202ENST00000359082 H0YIZ8 118 aa15.15■□□□□ 0.02
SHANK1-202ENST00000359082 TCRAP04437 139 aa15.15■□□□□ 0.02
SHANK1-202ENST00000359082 ACTL10Q5JWF8 245 aa15.15■□□□□ 0.02
SHANK1-202ENST00000359082 MESP1Q9BRJ9 268 aa15.15■□□□□ 0.02
SHANK1-202ENST00000359082 SLC25A39Q9BZJ4 359 aaPredicted RBP15.15■□□□□ 0.02
SHANK1-202ENST00000359082 PAX4O43316 350 aa15.15■□□□□ 0.02
SHANK1-202ENST00000359082 ZNF672Q499Z4 452 aaPredicted RBP15.15■□□□□ 0.02
SHANK1-202ENST00000359082 TREML4Q6UXN2 200 aa15.15■□□□□ 0.02
SHANK1-202ENST00000359082 NAA38Q9BRA0 125 aaKnown RBP15.14■□□□□ 0.01
SHANK1-202ENST00000359082 F8VVB4 439 aa15.14■□□□□ 0.01
SHANK1-202ENST00000359082 F8VWA3 439 aa15.14■□□□□ 0.01
SHANK1-202ENST00000359082 ZNF876PQ49A33 203 aa15.14■□□□□ 0.01
SHANK1-202ENST00000359082 PAQR4Q8N4S7 273 aaPredicted RBP15.14■□□□□ 0.01
SHANK1-202ENST00000359082 LAMTOR3Q9UHA4 124 aa15.14■□□□□ 0.01
SHANK1-202ENST00000359082 SCN10AQ9Y5Y9 1956 aa15.14■□□□□ 0.01
SHANK1-202ENST00000359082 A0A087WX48 190 aa15.14■□□□□ 0.01
SHANK1-202ENST00000359082 PSCAO43653 123 aa15.14■□□□□ 0.01
SHANK1-202ENST00000359082 SELLP14151 372 aa15.14■□□□□ 0.01
SHANK1-202ENST00000359082 PRTN3P24158 256 aa15.14■□□□□ 0.01
SHANK1-202ENST00000359082 LYZL1Q6UWQ5 148 aa15.14■□□□□ 0.01
SHANK1-202ENST00000359082 LSM4Q9Y4Z0 139 aaKnown RBP15.14■□□□□ 0.01
SHANK1-202ENST00000359082 GAGE13Q4V321 117 aa15.13■□□□□ 0.01
SHANK1-202ENST00000359082 RP1L1Q8IWN7 2480 aaPredicted RBP15.13■□□□□ 0.01
SHANK1-202ENST00000359082 IGHV1-3A0A0C4DH29 117 aa15.13■□□□□ 0.01
SHANK1-202ENST00000359082 E9PLN8 166 aa15.13■□□□□ 0.01
SHANK1-202ENST00000359082 LYPD3O95274 346 aa15.13■□□□□ 0.01
SHANK1-202ENST00000359082 PSME4Q14997 1843 aa15.13■□□□□ 0.01
SHANK1-202ENST00000359082 PSG1P11464 419 aa15.13■□□□□ 0.01
SHANK1-202ENST00000359082 HSD52Q0P140 79 aa15.13■□□□□ 0.01
SHANK1-202ENST00000359082 IGFL4Q6B9Z1 124 aa15.13■□□□□ 0.01
SHANK1-202ENST00000359082 GFI1Q99684 422 aa15.13■□□□□ 0.01
SHANK1-202ENST00000359082 TPTE2P1Q5T6R2 138 aa15.13■□□□□ 0.01
SHANK1-202ENST00000359082 LOC102723996A0A087X1L8 192 aa15.12■□□□□ 0.01
SHANK1-202ENST00000359082 TMEM249Q2WGJ8 235 aa15.12■□□□□ 0.01
SHANK1-202ENST00000359082 BRD3OSQ6XYD6 125 aa15.12■□□□□ 0.01
SHANK1-202ENST00000359082 SSC4DQ8WTU2 575 aa15.12■□□□□ 0.01
SHANK1-202ENST00000359082 SH2D1AO60880 128 aa15.12■□□□□ 0.01
SHANK1-202ENST00000359082 MGST2Q99735 147 aa15.12■□□□□ 0.01
SHANK1-202ENST00000359082 CKAP5Q14008 2032 aa15.12■□□□□ 0.01
SHANK1-202ENST00000359082 CXCL1P09341 107 aa15.12■□□□□ 0.01
SHANK1-202ENST00000359082 IGHV1-8P0DP01 117 aa15.12■□□□□ 0.01
SHANK1-202ENST00000359082 IGLV3-12A0A075B6K2 115 aa15.12■□□□□ 0.01
SHANK1-202ENST00000359082 TMEM238C9JI98 176 aa15.12■□□□□ 0.01
SHANK1-202ENST00000359082 HIST1H2BLQ99880 126 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 TRAV3A0A0B4J244 114 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 FCN3O75636 299 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 HEPN1Q6WQI6 88 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 IGKV1-12A0A0C4DH73 117 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 IGKV1D-12P01611 117 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 FOXG1P55316 489 aaPredicted RBP15.11■□□□□ 0.01
SHANK1-202ENST00000359082 ID3Q02535 119 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 TEX43Q6ZNM6 134 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 RPUSD1Q9UJJ7 312 aaKnown RBP15.11■□□□□ 0.01
SHANK1-202ENST00000359082 GAGE2EQ4V326 116 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 TNFRSF14Q92956 283 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 MS4A6AQ9H2W1 248 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 GAGE2DQ9UEU5 116 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 FLVCR1-AS1Q8TAF5 88 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 GGTLC1Q9BX51 225 aa15.11■□□□□ 0.01
SHANK1-202ENST00000359082 CD177Q8N6Q3 437 aa15.1■□□□□ 0.01
SHANK1-202ENST00000359082 UBE2E2Q96LR5 201 aa15.1■□□□□ 0.01
SHANK1-202ENST00000359082 WDR83OSQ9Y284 106 aa15.1■□□□□ 0.01
SHANK1-202ENST00000359082 Q8TAT8 98 aa15.1■□□□□ 0.01
SHANK1-202ENST00000359082 SRRM4A7MD48 611 aaKnown RBP15.1■□□□□ 0.01
SHANK1-202ENST00000359082 C1orf122Q6ZSJ8 110 aa15.1■□□□□ 0.01
SHANK1-202ENST00000359082 ZNF48Q96MX3 618 aaPredicted RBP15.1■□□□□ 0.01
SHANK1-202ENST00000359082 ARID2Q68CP9 1835 aa15.1■□□□□ 0.01
SHANK1-202ENST00000359082 IGLV3-32A0A0A0MS00 114 aa15.1■□□□□ 0.01
SHANK1-202ENST00000359082 HGFACQ04756 655 aa15.1■□□□□ 0.01
SHANK1-202ENST00000359082 ZNF562Q6V9R5 426 aa15.1■□□□□ 0.01
SHANK1-202ENST00000359082 LOC285556D6RIA3 1793 aa15.09■□□□□ 0.01
SHANK1-202ENST00000359082 FGF16O43320 207 aa15.09■□□□□ 0.01
SHANK1-202ENST00000359082 LILRA1O75019 489 aa15.09■□□□□ 0.01
SHANK1-202ENST00000359082 DSCR9P59020 149 aa15.09■□□□□ 0.01
SHANK1-202ENST00000359082 INS-IGF2F8WCM5 200 aa15.09■□□□□ 0.01
SHANK1-202ENST00000359082 INSP01308 110 aa15.09■□□□□ 0.01
SHANK1-202ENST00000359082 BRCA1P38398 1863 aaKnown RBP15.09■□□□□ 0.01
SHANK1-202ENST00000359082 J3QRE1 110 aa15.09■□□□□ 0.01
SHANK1-202ENST00000359082 GNLYP22749 145 aa15.09■□□□□ 0.01
SHANK1-202ENST00000359082 IGKV1-27A0A075B6S5 117 aa15.08■□□□□ 0.01
SHANK1-202ENST00000359082 hDV102S1A0JD36 115 aa15.08■□□□□ 0.01
SHANK1-202ENST00000359082 CRYGSP22914 178 aa15.08■□□□□ 0.01
SHANK1-202ENST00000359082 ERCC8Q13216 396 aa15.08■□□□□ 0.01
SHANK1-202ENST00000359082 HIST3H2BBQ8N257 126 aa15.08■□□□□ 0.01
SHANK1-202ENST00000359082 LGALS1P09382 135 aaKnown RBP15.08■□□□□ 0
SHANK1-202ENST00000359082 KLF17Q5JT82 389 aaPredicted RBP15.08■□□□□ 0
SHANK1-202ENST00000359082 SEC11AP67812 179 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms