RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CCL20P78556 96 aa16.9■□□□□ 0.3
UPF1-207ENST00000599848 MRPL16Q9NX20 251 aaKnown RBP16.9■□□□□ 0.3
UPF1-207ENST00000599848 TRGC2P03986 189 aa16.9■□□□□ 0.3
UPF1-207ENST00000599848 UBE2E1P51965 193 aa16.9■□□□□ 0.3
UPF1-207ENST00000599848 TFF3Q07654 80 aa16.9■□□□□ 0.3
UPF1-207ENST00000599848 TTC32Q5I0X7 151 aa16.9■□□□□ 0.3
UPF1-207ENST00000599848 RPL35AP18077 110 aaKnown RBP16.89■□□□□ 0.3
UPF1-207ENST00000599848 FBLN7Q53RD9 439 aa16.89■□□□□ 0.3
UPF1-207ENST00000599848 MTURNQ8N3F0 131 aa16.89■□□□□ 0.3
UPF1-207ENST00000599848 RFNGQ9Y644 331 aa16.89■□□□□ 0.3
UPF1-207ENST00000599848 RBBP6Q7Z6E9 1792 aaKnown RBP16.89■□□□□ 0.29
UPF1-207ENST00000599848 TMEM219Q86XT9 240 aa16.89■□□□□ 0.29
UPF1-207ENST00000599848 CST9LQ9H4G1 147 aa16.89■□□□□ 0.29
UPF1-207ENST00000599848 CD24P25063 80 aa16.89■□□□□ 0.29
UPF1-207ENST00000599848 ZNF525Q8N782 197 aa16.89■□□□□ 0.29
UPF1-207ENST00000599848 DAZ1Q9NQZ3 744 aaKnown RBP16.89■□□□□ 0.29
UPF1-207ENST00000599848 TDRD6O60522 2096 aaKnown RBP16.89■□□□□ 0.29
UPF1-207ENST00000599848 TRGV9Q99603 122 aa16.88■□□□□ 0.29
UPF1-207ENST00000599848 BRD3OSQ6XYD6 125 aa16.88■□□□□ 0.29
UPF1-207ENST00000599848 OR10W1Q8NGF6 305 aa16.88■□□□□ 0.29
UPF1-207ENST00000599848 ARID1AO14497 2285 aa16.88■□□□□ 0.29
UPF1-207ENST00000599848 LINC01619G3V211 115 aa16.88■□□□□ 0.29
UPF1-207ENST00000599848 BUB1B-PAK6H3BSN5 160 aa16.88■□□□□ 0.29
UPF1-207ENST00000599848 RASL10AQ92737 203 aa16.88■□□□□ 0.29
UPF1-207ENST00000599848 NRXN2Q9P2S2 1712 aa16.87■□□□□ 0.29
UPF1-207ENST00000599848 TSPAN13O95857 204 aa16.87■□□□□ 0.29
UPF1-207ENST00000599848 F11RQ9Y624 299 aaKnown RBP16.87■□□□□ 0.29
UPF1-207ENST00000599848 A0A1B0GUS0 222 aa16.87■□□□□ 0.29
UPF1-207ENST00000599848 CR1LQ2VPA4 569 aa16.87■□□□□ 0.29
UPF1-207ENST00000599848 C18orf15Q96N68 181 aa16.87■□□□□ 0.29
UPF1-207ENST00000599848 SS18Q15532 418 aa16.86■□□□□ 0.29
UPF1-207ENST00000599848 ZNF362Q5T0B9 420 aaPredicted RBP16.86■□□□□ 0.29
UPF1-207ENST00000599848 NAPSAO96009 420 aa16.86■□□□□ 0.29
UPF1-207ENST00000599848 C1QCP02747 245 aa16.86■□□□□ 0.29
UPF1-207ENST00000599848 ZNF138P52744 262 aa16.86■□□□□ 0.29
UPF1-207ENST00000599848 NMBP08949 121 aa16.86■□□□□ 0.29
UPF1-207ENST00000599848 GZMBP10144 247 aa16.86■□□□□ 0.29
UPF1-207ENST00000599848 OSTCQ9NRP0 149 aa16.86■□□□□ 0.29
UPF1-207ENST00000599848 ZNF250P15622 560 aa16.86■□□□□ 0.29
UPF1-207ENST00000599848 CSRP3P50461 194 aa16.86■□□□□ 0.29
UPF1-207ENST00000599848 C10orf126Q8N4M7 172 aa16.86■□□□□ 0.29
UPF1-207ENST00000599848 FAM89BQ8N5H3 189 aa16.86■□□□□ 0.29
UPF1-207ENST00000599848 PSG1P11464 419 aa16.85■□□□□ 0.29
UPF1-207ENST00000599848 Q0VFX4 171 aa16.85■□□□□ 0.29
UPF1-207ENST00000599848 OR2K2Q8NGT1 345 aa16.85■□□□□ 0.29
UPF1-207ENST00000599848 RHODO00212 210 aa16.85■□□□□ 0.29
UPF1-207ENST00000599848 KIAA1644Q3SXP7 199 aa16.85■□□□□ 0.29
UPF1-207ENST00000599848 LYPD1Q8N2G4 141 aa16.85■□□□□ 0.29
UPF1-207ENST00000599848 SLC25A2Q9BXI2 301 aa16.85■□□□□ 0.29
UPF1-207ENST00000599848 ACTL10Q5JWF8 245 aa16.84■□□□□ 0.29
UPF1-207ENST00000599848 CEP290O15078 2479 aa16.84■□□□□ 0.29
UPF1-207ENST00000599848 IGHV1-69DA0A0B4J2H0 117 aa16.84■□□□□ 0.29
UPF1-207ENST00000599848 IGHV1-69P01742 117 aa16.84■□□□□ 0.29
UPF1-207ENST00000599848 FOXA3P55318 350 aaPredicted RBP16.84■□□□□ 0.29
UPF1-207ENST00000599848 DAD1P61803 113 aa16.84■□□□□ 0.29
UPF1-207ENST00000599848 NABP1Q96AH0 204 aa16.84■□□□□ 0.29
UPF1-207ENST00000599848 LINC00527Q9UJ94 153 aa16.84■□□□□ 0.29
UPF1-207ENST00000599848 RTTNQ86VV8 2226 aa16.84■□□□□ 0.29
UPF1-207ENST00000599848 LINC00158P58513 81 aa16.84■□□□□ 0.29
UPF1-207ENST00000599848 ZNF324BQ6AW86 544 aaPredicted RBP16.84■□□□□ 0.29
UPF1-207ENST00000599848 SMPXQ9UHP9 88 aa16.84■□□□□ 0.29
UPF1-207ENST00000599848 SCO2A0A1W2PP80 73 aa16.84■□□□□ 0.29
UPF1-207ENST00000599848 HBDP02042 147 aa16.83■□□□□ 0.29
UPF1-207ENST00000599848 SAA4P35542 130 aa16.83■□□□□ 0.29
UPF1-207ENST00000599848 C11orf68Q9H3H3 251 aaKnown RBP16.83■□□□□ 0.29
UPF1-207ENST00000599848 TAF1LQ8IZX4 1826 aa16.83■□□□□ 0.28
UPF1-207ENST00000599848 GGTLC3B5MD39 225 aa16.83■□□□□ 0.28
UPF1-207ENST00000599848 KLRD1Q13241 179 aa16.83■□□□□ 0.28
UPF1-207ENST00000599848 RASL11AQ6T310 242 aa16.83■□□□□ 0.28
UPF1-207ENST00000599848 C18orf12Q96KH6 178 aa16.82■□□□□ 0.28
UPF1-207ENST00000599848 SUPT4H1P63272 117 aaKnown RBP16.82■□□□□ 0.28
UPF1-207ENST00000599848 OVOL2Q9BRP0 275 aa16.82■□□□□ 0.28
UPF1-207ENST00000599848 WDR83OSQ9Y284 106 aa16.82■□□□□ 0.28
UPF1-207ENST00000599848 TRPM7Q96QT4 1865 aa16.82■□□□□ 0.28
UPF1-207ENST00000599848 ATP5L2Q7Z4Y8 100 aa16.82■□□□□ 0.28
UPF1-207ENST00000599848 PLEKHB2Q96CS7 222 aa16.82■□□□□ 0.28
UPF1-207ENST00000599848 GAFA1Q96PS6 74 aa16.82■□□□□ 0.28
UPF1-207ENST00000599848 DPRXA6NFQ7 191 aa16.82■□□□□ 0.28
UPF1-207ENST00000599848 MLNRO43193 412 aa16.82■□□□□ 0.28
UPF1-207ENST00000599848 HIGD1CA8MV81 97 aa16.81■□□□□ 0.28
UPF1-207ENST00000599848 MDKP21741 143 aaPredicted RBP16.81■□□□□ 0.28
UPF1-207ENST00000599848 RTBDNQ9BSG5 229 aaPredicted RBP16.81■□□□□ 0.28
UPF1-207ENST00000599848 RHPN1-AS1Q9BWJ2 59 aa16.81■□□□□ 0.28
UPF1-207ENST00000599848 COL11A1P12107 1806 aaPredicted RBP16.81■□□□□ 0.28
UPF1-207ENST00000599848 DOCK5Q9H7D0 1870 aa16.81■□□□□ 0.28
UPF1-207ENST00000599848 ITGB1BP1O14713 200 aa16.81■□□□□ 0.28
UPF1-207ENST00000599848 ERCC8Q13216 396 aa16.81■□□□□ 0.28
UPF1-207ENST00000599848 DPM2O94777 84 aa16.8■□□□□ 0.28
UPF1-207ENST00000599848 MST1P26927 711 aa16.8■□□□□ 0.28
UPF1-207ENST00000599848 LYZL4Q96KX0 146 aa16.8■□□□□ 0.28
UPF1-207ENST00000599848 ZNF236Q9UL36 1845 aa16.8■□□□□ 0.28
UPF1-207ENST00000599848 SRRM4A7MD48 611 aaKnown RBP16.8■□□□□ 0.28
UPF1-207ENST00000599848 GATA2P23769 480 aaPredicted RBP16.8■□□□□ 0.28
UPF1-207ENST00000599848 CBLN1P23435 193 aa16.79■□□□□ 0.28
UPF1-207ENST00000599848 E7EQL1 145 aa16.79■□□□□ 0.28
UPF1-207ENST00000599848 VCYO14598 125 aa16.79■□□□□ 0.28
UPF1-207ENST00000599848 PLXNA1Q9UIW2 1896 aa16.79■□□□□ 0.28
UPF1-207ENST00000599848 LOC285556D6RIA3 1793 aa16.79■□□□□ 0.28
UPF1-207ENST00000599848 H0YJW9 148 aa16.79■□□□□ 0.28
UPF1-207ENST00000599848 TRBV6-6A0A0A6YYG2 114 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms