RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 C7orf71A4D174 169 aa0.32□□□□□ -2.36
SS18-214ENST00000580003 OR2J2O76002 312 aa0.32□□□□□ -2.36
SS18-214ENST00000580003 OR2F1Q13607 317 aa0.32□□□□□ -2.36
SS18-214ENST00000580003 ESRGQ1W209 222 aa0.32□□□□□ -2.36
SS18-214ENST00000580003 BRMS1LQ5PSV4 323 aa0.32□□□□□ -2.36
SS18-214ENST00000580003 C8orf74Q6P047 294 aa0.32□□□□□ -2.36
SS18-214ENST00000580003 LINC00322Q6ZN03 302 aaPredicted RBP0.32□□□□□ -2.36
SS18-214ENST00000580003 OR52R1Q8NGF1 315 aa0.32□□□□□ -2.36
SS18-214ENST00000580003 DCSTAMPQ9H295 470 aa0.32□□□□□ -2.36
SS18-214ENST00000580003 MYO3BQ8WXR4 1341 aa0.32□□□□□ -2.36
SS18-214ENST00000580003 FRAS1Q86XX4 4008 aa0.31□□□□□ -2.36
SS18-214ENST00000580003 OR4E1P0C645 316 aa0.31□□□□□ -2.36
SS18-214ENST00000580003 LCA10Q71F78 164 aa0.31□□□□□ -2.36
SS18-214ENST00000580003 C20orf27Q9GZN8 174 aa0.31□□□□□ -2.36
SS18-214ENST00000580003 DOCK3Q8IZD9 2030 aa0.31□□□□□ -2.36
SS18-214ENST00000580003 MACF1Q9UPN3 7388 aaKnown RBP0.31□□□□□ -2.36
SS18-214ENST00000580003 PIRO00625 290 aa0.3□□□□□ -2.36
SS18-214ENST00000580003 HIST1H1EP10412 219 aaKnown RBP0.3□□□□□ -2.36
SS18-214ENST00000580003 DEFA1P59665 94 aa0.3□□□□□ -2.36
SS18-214ENST00000580003 LINC01554Q52M75 96 aa0.3□□□□□ -2.36
SS18-214ENST00000580003 LLPHQ9BRT6 129 aaKnown RBP0.3□□□□□ -2.36
SS18-214ENST00000580003 TLNRD1Q9H1K6 362 aa0.3□□□□□ -2.36
SS18-214ENST00000580003 C14orf132Q9NPU4 83 aa0.3□□□□□ -2.36
SS18-214ENST00000580003 WRNQ14191 1432 aaPredicted RBP eCLIP0.3□□□□□ -2.36
SS18-214ENST00000580003 DOCK5Q9H7D0 1870 aa0.29□□□□□ -2.36
SS18-214ENST00000580003 TRBV6-4A0A1B0GX49 114 aa0.29□□□□□ -2.36
SS18-214ENST00000580003 CCL16O15467 120 aa0.29□□□□□ -2.36
SS18-214ENST00000580003 SMIM10L2AP0DMW4 78 aa0.29□□□□□ -2.36
SS18-214ENST00000580003 SMIM10L2BP0DMW5 78 aa0.29□□□□□ -2.36
SS18-214ENST00000580003 MAGOHP61326 146 aaKnown RBP0.29□□□□□ -2.36
SS18-214ENST00000580003 ACOT6Q3I5F7 207 aaPredicted RBP0.29□□□□□ -2.36
SS18-214ENST00000580003 CCDC122Q5T0U0 273 aa0.29□□□□□ -2.36
SS18-214ENST00000580003 KRT222Q8N1A0 295 aa0.29□□□□□ -2.36
SS18-214ENST00000580003 MAP3K5Q99683 1374 aa0.29□□□□□ -2.36
SS18-214ENST00000580003 OR4C46A6NHA9 309 aa0.28□□□□□ -2.36
SS18-214ENST00000580003 RBP1P09455 135 aa0.28□□□□□ -2.36
SS18-214ENST00000580003 SULT1A1P50225 295 aa0.28□□□□□ -2.36
SS18-214ENST00000580003 PLPP5Q8NEB5 264 aa0.28□□□□□ -2.36
SS18-214ENST00000580003 DCUN1D1Q96GG9 259 aa0.28□□□□□ -2.36
SS18-214ENST00000580003 CCDC90BQ9GZT6 254 aa0.28□□□□□ -2.36
SS18-214ENST00000580003 MRPL27Q9P0M9 148 aaKnown RBP0.28□□□□□ -2.36
SS18-214ENST00000580003 GUCA1BQ9UMX6 200 aa0.28□□□□□ -2.36
SS18-214ENST00000580003 CYSLTR1Q9Y271 337 aa0.28□□□□□ -2.36
SS18-214ENST00000580003 ECM29Q5VYK3 1845 aa0.28□□□□□ -2.36
SS18-214ENST00000580003 TAF1LQ8IZX4 1826 aa0.28□□□□□ -2.36
SS18-214ENST00000580003 A0A087X0T9 212 aa0.27□□□□□ -2.37
SS18-214ENST00000580003 UTP11Q9Y3A2 253 aaKnown RBP0.27□□□□□ -2.37
SS18-214ENST00000580003 KCPQ6ZWJ8 1503 aa0.27□□□□□ -2.37
SS18-214ENST00000580003 SBF1O95248 1867 aa0.27□□□□□ -2.37
SS18-214ENST00000580003 APCP25054 2843 aa0.26□□□□□ -2.37
SS18-214ENST00000580003 TLCD2A6NGC4 264 aa0.26□□□□□ -2.37
SS18-214ENST00000580003 CETN3O15182 167 aa0.26□□□□□ -2.37
SS18-214ENST00000580003 KLF7O75840 302 aaPredicted RBP0.26□□□□□ -2.37
SS18-214ENST00000580003 CASP1P29466 404 aa0.26□□□□□ -2.37
SS18-214ENST00000580003 ANP32AP39687 249 aaKnown RBP0.26□□□□□ -2.37
SS18-214ENST00000580003 TSNQ15631 228 aaKnown RBP0.26□□□□□ -2.37
SS18-214ENST00000580003 HIST1H2BLQ99880 126 aa0.26□□□□□ -2.37
SS18-214ENST00000580003 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.25□□□□□ -2.37
SS18-214ENST00000580003 TRAV26-2A0A0B4J265 109 aa0.25□□□□□ -2.37
SS18-214ENST00000580003 SPINK9Q5DT21 86 aa0.25□□□□□ -2.37
SS18-214ENST00000580003 LINC00575Q6W349 94 aa0.25□□□□□ -2.37
SS18-214ENST00000580003 ST6GALNAC3Q8NDV1 305 aa0.25□□□□□ -2.37
SS18-214ENST00000580003 OR11H6Q8NGC7 330 aa0.25□□□□□ -2.37
SS18-214ENST00000580003 OR2T10Q8NGZ9 312 aa0.25□□□□□ -2.37
SS18-214ENST00000580003 TMEM254Q8TBM7 123 aa0.25□□□□□ -2.37
SS18-214ENST00000580003 PLAC8Q9NZF1 115 aa0.25□□□□□ -2.37
SS18-214ENST00000580003 ZNF462Q96JM2 2506 aa0.24□□□□□ -2.37
SS18-214ENST00000580003 SNAPC4Q5SXM2 1469 aa0.24□□□□□ -2.37
SS18-214ENST00000580003 IFNA5P01569 189 aa0.24□□□□□ -2.37
SS18-214ENST00000580003 IGLV3-1P01715 115 aa0.24□□□□□ -2.37
SS18-214ENST00000580003 CDKL4Q5MAI5 379 aa0.24□□□□□ -2.37
SS18-214ENST00000580003 PRRT1Q99946 306 aa0.24□□□□□ -2.37
SS18-214ENST00000580003 BCL2L10Q9HD36 194 aa0.24□□□□□ -2.37
SS18-214ENST00000580003 UBAP1Q9NZ09 502 aa0.24□□□□□ -2.37
SS18-214ENST00000580003 HECW1Q76N89 1606 aa0.24□□□□□ -2.37
SS18-214ENST00000580003 NEO1Q92859 1461 aa0.23□□□□□ -2.37
SS18-214ENST00000580003 CASP8AP2Q9UKL3 1982 aa0.23□□□□□ -2.37
SS18-214ENST00000580003 IGLV3-32A0A0A0MS00 114 aa0.23□□□□□ -2.37
SS18-214ENST00000580003 IGHV1-58A0A0C4DH39 117 aa0.23□□□□□ -2.37
SS18-214ENST00000580003 J3QRK9 145 aa0.23□□□□□ -2.37
SS18-214ENST00000580003 CHP2O43745 196 aa0.23□□□□□ -2.37
SS18-214ENST00000580003 DHFRP00374 187 aa0.23□□□□□ -2.37
SS18-214ENST00000580003 CIRBPQ14011 172 aaKnown RBP0.23□□□□□ -2.37
SS18-214ENST00000580003 OR8D4Q8NGM9 314 aa0.23□□□□□ -2.37
SS18-214ENST00000580003 C14orf105Q9NVL8 296 aa0.23□□□□□ -2.37
SS18-214ENST00000580003 MED1Q15648 1581 aaPredicted RBP0.23□□□□□ -2.37
SS18-214ENST00000580003 ALPK3Q96L96 1907 aa0.23□□□□□ -2.37
SS18-214ENST00000580003 NAV3Q8IVL0 2385 aa0.22□□□□□ -2.37
SS18-214ENST00000580003 NUPR1O60356 82 aa0.22□□□□□ -2.37
SS18-214ENST00000580003 NKX2-5P52952 324 aaPredicted RBP0.22□□□□□ -2.37
SS18-214ENST00000580003 RHOBP62745 196 aa0.22□□□□□ -2.37
SS18-214ENST00000580003 VPS29Q9UBQ0 182 aa0.22□□□□□ -2.37
SS18-214ENST00000580003 KDM6AO15550 1401 aaPredicted RBP0.21□□□□□ -2.38
SS18-214ENST00000580003 HECW2Q9P2P5 1572 aa0.21□□□□□ -2.38
SS18-214ENST00000580003 TCRBV4S1A1TA0A5B7 111 aa0.21□□□□□ -2.38
SS18-214ENST00000580003 C1orf196B1AJZ1 125 aa0.21□□□□□ -2.38
SS18-214ENST00000580003 ZNF682O95780 498 aa0.21□□□□□ -2.38
SS18-214ENST00000580003 AP3S2P59780 193 aa0.21□□□□□ -2.38
SS18-214ENST00000580003 KRTAP26-1Q6PEX3 210 aa0.21□□□□□ -2.38
SS18-214ENST00000580003 C2orf82Q6UX34 121 aa0.21□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms