RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 RNF114Q9Y508 228 aa13.01□□□□□ -0.33
USP43-204ENST00000573955 B9A039 149 aa13.01□□□□□ -0.33
USP43-204ENST00000573955 LY6HO94772 140 aa13.01□□□□□ -0.33
USP43-204ENST00000573955 IFNA1P01562 189 aa13.01□□□□□ -0.33
USP43-204ENST00000573955 REG1BP48304 166 aa13.01□□□□□ -0.33
USP43-204ENST00000573955 PSG9Q00887 426 aa13.01□□□□□ -0.33
USP43-204ENST00000573955 PRB3Q04118 309 aaPredicted RBP13.01□□□□□ -0.33
USP43-204ENST00000573955 SHISA2Q6UWI4 295 aa13.01□□□□□ -0.33
USP43-204ENST00000573955 C5orf17Q8NAS9 161 aa13.01□□□□□ -0.33
USP43-204ENST00000573955 CHODLQ9H9P2 273 aa13.01□□□□□ -0.33
USP43-204ENST00000573955 MED13LQ71F56 2210 aa13.01□□□□□ -0.33
USP43-204ENST00000573955 VPS13CQ709C8 3753 aa13.01□□□□□ -0.33
USP43-204ENST00000573955 ZNF253O75346 499 aa13□□□□□ -0.33
USP43-204ENST00000573955 MYOD1P15172 320 aa13□□□□□ -0.33
USP43-204ENST00000573955 SMAGPQ0VAQ4 97 aa13□□□□□ -0.33
USP43-204ENST00000573955 OR4F17Q8NGA8 305 aa13□□□□□ -0.33
USP43-204ENST00000573955 OR4F4Q96R69 305 aa13□□□□□ -0.33
USP43-204ENST00000573955 COL8A2P25067 703 aa13□□□□□ -0.33
USP43-204ENST00000573955 DLX1P56177 255 aa13□□□□□ -0.33
USP43-204ENST00000573955 C5orf64Q2M2E5 130 aa13□□□□□ -0.33
USP43-204ENST00000573955 LRRC75BQ2VPJ9 315 aa13□□□□□ -0.33
USP43-204ENST00000573955 LCN15Q6UWW0 184 aa13□□□□□ -0.33
USP43-204ENST00000573955 SFRP2Q96HF1 295 aa13□□□□□ -0.33
USP43-204ENST00000573955 WDR61Q9GZS3 305 aaKnown RBP13□□□□□ -0.33
USP43-204ENST00000573955 TET2Q6N021 2002 aaPredicted RBP12.99□□□□□ -0.33
USP43-204ENST00000573955 IGKV1-16P04430 117 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 FBXL19-AS1Q494R0 122 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 PET117Q6UWS5 81 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 SLC25A48Q6ZT89 311 aaKnown RBP12.99□□□□□ -0.33
USP43-204ENST00000573955 WNT10AQ9GZT5 417 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 RPRMQ9NS64 109 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 OR51B2Q9Y5P1 312 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 PRB1P04280 392 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 OR10J4P0C629 311 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 GPR6P46095 362 aaPredicted RBP12.99□□□□□ -0.33
USP43-204ENST00000573955 RELBQ01201 579 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 EFNB3Q15768 340 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 OR10P1Q8NGE3 313 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 SIGMAR1Q99720 223 aa12.99□□□□□ -0.33
USP43-204ENST00000573955 IGLC1P0CG04 106 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 GNLYP22749 145 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 THBS3P49746 956 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 TFF3Q07654 80 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 OR4P4Q8NGL7 312 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 TAF15Q92804 592 aaKnown RBP eCLIP12.98□□□□□ -0.33
USP43-204ENST00000573955 HINT2Q9BX68 163 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 GTSF1LQ9H1H1 148 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 HEYLQ9NQ87 328 aaPredicted RBP12.98□□□□□ -0.33
USP43-204ENST00000573955 GPX1P07203 203 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 CT45A6P0DMU7 189 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 CT45A5P0DMU8 189 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 CT45A7P0DMV0 189 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 LOXP28300 417 aaPredicted RBP12.98□□□□□ -0.33
USP43-204ENST00000573955 ZNF672Q499Z4 452 aaPredicted RBP12.98□□□□□ -0.33
USP43-204ENST00000573955 OR8I2Q8N0Y5 310 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 DEFB125Q8N687 156 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 LINC00574Q9H8X3 128 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 TBL2Q9Y4P3 447 aaKnown RBP12.98□□□□□ -0.33
USP43-204ENST00000573955 SPG11Q96JI7 2443 aa12.98□□□□□ -0.33
USP43-204ENST00000573955 PMS2P5A8MQ11 134 aa12.97□□□□□ -0.33
USP43-204ENST00000573955 J3QR06 171 aa12.97□□□□□ -0.33
USP43-204ENST00000573955 MEF2CQ06413 473 aaPredicted RBP12.97□□□□□ -0.33
USP43-204ENST00000573955 DIAPH2-AS1Q14236 149 aa12.97□□□□□ -0.33
USP43-204ENST00000573955 NRN1Q9NPD7 142 aa12.97□□□□□ -0.33
USP43-204ENST00000573955 C15orf62A8K5M9 175 aa12.97□□□□□ -0.33
USP43-204ENST00000573955 TNFRSF13BO14836 293 aaPredicted RBP12.97□□□□□ -0.33
USP43-204ENST00000573955 KIR2DS2P43631 304 aa12.97□□□□□ -0.33
USP43-204ENST00000573955 MPV17L2Q567V2 206 aa12.97□□□□□ -0.33
USP43-204ENST00000573955 ABHD12Q8N2K0 398 aa12.97□□□□□ -0.33
USP43-204ENST00000573955 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.97□□□□□ -0.33
USP43-204ENST00000573955 MRPL20Q9BYC9 149 aaKnown RBP12.97□□□□□ -0.33
USP43-204ENST00000573955 CSMD2Q7Z408 3487 aa12.97□□□□□ -0.33
USP43-204ENST00000573955 FAM208BQ5VWN6 2430 aa12.97□□□□□ -0.33
USP43-204ENST00000573955 GAGE10A6NGK3 116 aa12.96□□□□□ -0.33
USP43-204ENST00000573955 HMGB3O15347 200 aaKnown RBP12.96□□□□□ -0.33
USP43-204ENST00000573955 YPEL3P61236 119 aaPredicted RBP12.96□□□□□ -0.33
USP43-204ENST00000573955 ZNF726P1Q15940 193 aa12.96□□□□□ -0.33
USP43-204ENST00000573955 WASHC3Q9Y3C0 194 aa12.96□□□□□ -0.33
USP43-204ENST00000573955 RRHO14718 337 aa12.96□□□□□ -0.33
USP43-204ENST00000573955 ATOH7Q8N100 152 aa12.96□□□□□ -0.33
USP43-204ENST00000573955 TMEM147Q9BVK8 224 aa12.96□□□□□ -0.33
USP43-204ENST00000573955 PEF1Q9UBV8 284 aaKnown RBP12.96□□□□□ -0.33
USP43-204ENST00000573955 SRRM4A7MD48 611 aaKnown RBP12.95□□□□□ -0.34
USP43-204ENST00000573955 DEFA4P12838 97 aa12.95□□□□□ -0.34
USP43-204ENST00000573955 OR10X1Q8NGY0 326 aa12.95□□□□□ -0.34
USP43-204ENST00000573955 TCF19Q9Y242 345 aa12.95□□□□□ -0.34
USP43-204ENST00000573955 TNCP24821 2201 aa12.95□□□□□ -0.34
USP43-204ENST00000573955 MALRD1Q5VYJ5 2156 aa12.95□□□□□ -0.34
USP43-204ENST00000573955 AMTP48728 403 aa12.95□□□□□ -0.34
USP43-204ENST00000573955 LRRK2Q5S007 2527 aa12.94□□□□□ -0.34
USP43-204ENST00000573955 IGKV1D-33P01593 117 aa12.94□□□□□ -0.34
USP43-204ENST00000573955 IGKV1-33P01594 117 aa12.94□□□□□ -0.34
USP43-204ENST00000573955 MEF2BQ02080 365 aaPredicted RBP12.94□□□□□ -0.34
USP43-204ENST00000573955 MBD3L1Q8WWY6 194 aa12.94□□□□□ -0.34
USP43-204ENST00000573955 ADTRPQ96IZ2 230 aa12.94□□□□□ -0.34
USP43-204ENST00000573955 TRAV8-6A0A0B4J262 113 aa12.94□□□□□ -0.34
USP43-204ENST00000573955 C15orf61A6NNL5 157 aa12.94□□□□□ -0.34
USP43-204ENST00000573955 RAB31Q13636 194 aa12.94□□□□□ -0.34
USP43-204ENST00000573955 PMCHL1Q16048 86 aa12.94□□□□□ -0.34
USP43-204ENST00000573955 ACSM6Q6P461 480 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms