RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 SPART-AS1P0CW21 52 aa13.61□□□□□ -0.23
NUP88-203ENST00000572019 PGAM2P15259 253 aa13.61□□□□□ -0.23
NUP88-203ENST00000572019 RND2P52198 227 aa13.61□□□□□ -0.23
NUP88-203ENST00000572019 SUB1P53999 127 aaKnown RBP eCLIP13.61□□□□□ -0.23
NUP88-203ENST00000572019 PIGPP57054 158 aa13.61□□□□□ -0.23
NUP88-203ENST00000572019 RND3P61587 244 aa13.61□□□□□ -0.23
NUP88-203ENST00000572019 RNASE12Q5GAN4 147 aaKnown RBP13.61□□□□□ -0.23
NUP88-203ENST00000572019 DKK2Q9UBU2 259 aa13.61□□□□□ -0.23
NUP88-203ENST00000572019 TMEM127O75204 238 aa13.6□□□□□ -0.23
NUP88-203ENST00000572019 IFNA21P01568 189 aa13.6□□□□□ -0.23
NUP88-203ENST00000572019 HLA-DRB4P13762 266 aa13.6□□□□□ -0.23
NUP88-203ENST00000572019 HTN3P15516 51 aa13.6□□□□□ -0.23
NUP88-203ENST00000572019 TNP2Q05952 138 aa13.6□□□□□ -0.23
NUP88-203ENST00000572019 KCTD21Q4G0X4 260 aa13.6□□□□□ -0.23
NUP88-203ENST00000572019 FAM222AQ5U5X8 452 aa13.6□□□□□ -0.23
NUP88-203ENST00000572019 LHFPL1Q86WI0 220 aa13.6□□□□□ -0.23
NUP88-203ENST00000572019 NARS2Q96I59 477 aaKnown RBP13.6□□□□□ -0.23
NUP88-203ENST00000572019 NEU1Q99519 415 aa13.6□□□□□ -0.23
NUP88-203ENST00000572019 C1QTNF4Q9BXJ3 329 aa13.6□□□□□ -0.23
NUP88-203ENST00000572019 HLA-DRB4X5D2U9 266 aa13.6□□□□□ -0.23
NUP88-203ENST00000572019 ZNF709Q8N972 641 aa13.59□□□□□ -0.23
NUP88-203ENST00000572019 WDR12Q9GZL7 423 aaKnown RBP13.59□□□□□ -0.23
NUP88-203ENST00000572019 NRN1Q9NPD7 142 aa13.59□□□□□ -0.23
NUP88-203ENST00000572019 C3orf85A0A1B0GTC6 90 aa13.58□□□□□ -0.24
NUP88-203ENST00000572019 BUB3O43684 328 aa13.58□□□□□ -0.24
NUP88-203ENST00000572019 IL4P05112 153 aa13.58□□□□□ -0.24
NUP88-203ENST00000572019 OR10J1P30954 320 aa13.58□□□□□ -0.24
NUP88-203ENST00000572019 RCVRNP35243 200 aa13.58□□□□□ -0.24
NUP88-203ENST00000572019 C1orf134Q5TEV5 83 aa13.58□□□□□ -0.24
NUP88-203ENST00000572019 CROCCP3Q8IVE0 287 aa13.58□□□□□ -0.24
NUP88-203ENST00000572019 OR1S2Q8NGQ3 325 aa13.58□□□□□ -0.24
NUP88-203ENST00000572019 PDCD10Q9BUL8 212 aa13.58□□□□□ -0.24
NUP88-203ENST00000572019 YTHDF1Q9BYJ9 559 aaKnown RBP13.58□□□□□ -0.24
NUP88-203ENST00000572019 APOBP04114 4563 aaKnown RBP13.57□□□□□ -0.24
NUP88-203ENST00000572019 TRAV30A0A087WSZ9 112 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 EIF2B2P49770 351 aaKnown RBP13.57□□□□□ -0.24
NUP88-203ENST00000572019 YPEL3P61236 119 aaPredicted RBP13.57□□□□□ -0.24
NUP88-203ENST00000572019 NUTF2P61970 127 aaKnown RBP13.57□□□□□ -0.24
NUP88-203ENST00000572019 SNRPD3P62318 126 aaKnown RBP13.57□□□□□ -0.24
NUP88-203ENST00000572019 TRIM16LQ309B1 348 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 TMEM88Q6PEY1 159 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 SIGLEC15Q6ZMC9 328 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 OR4D10Q8NGI6 311 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 LHFPL5Q8TAF8 219 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 Q8WTZ3 238 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 YIPF6Q96EC8 236 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 NIPSNAP3BQ9BS92 247 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 SLC35B3Q9H1N7 401 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 SCPEP1Q9HB40 452 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 ENY2Q9NPA8 101 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 COMMD3Q9UBI1 195 aa13.57□□□□□ -0.24
NUP88-203ENST00000572019 ELK1P19419 428 aa13.56□□□□□ -0.24
NUP88-203ENST00000572019 AP2S1P53680 142 aaPredicted RBP13.56□□□□□ -0.24
NUP88-203ENST00000572019 C1orf158Q8N1D5 194 aa13.56□□□□□ -0.24
NUP88-203ENST00000572019 NPIPB3Q92617 1050 aa13.56□□□□□ -0.24
NUP88-203ENST00000572019 KLK11Q9UBX7 282 aa13.56□□□□□ -0.24
NUP88-203ENST00000572019 C16orf90A8MZG2 172 aa13.55□□□□□ -0.24
NUP88-203ENST00000572019 PRM2P04554 102 aa13.55□□□□□ -0.24
NUP88-203ENST00000572019 UCP1P25874 307 aa13.55□□□□□ -0.24
NUP88-203ENST00000572019 RNF212Q495C1 297 aa13.55□□□□□ -0.24
NUP88-203ENST00000572019 AARDQ4LEZ3 155 aa13.55□□□□□ -0.24
NUP88-203ENST00000572019 MAPKAPK5-AS1Q8N8E1 139 aa13.55□□□□□ -0.24
NUP88-203ENST00000572019 OR51G1Q8NGK1 321 aa13.55□□□□□ -0.24
NUP88-203ENST00000572019 FAM210BQ96KR6 192 aa13.55□□□□□ -0.24
NUP88-203ENST00000572019 RFNGQ9Y644 331 aa13.55□□□□□ -0.24
NUP88-203ENST00000572019 SMIM9A6NGZ8 99 aa13.54□□□□□ -0.24
NUP88-203ENST00000572019 F6UB75 175 aa13.54□□□□□ -0.24
NUP88-203ENST00000572019 HPGDSO60760 199 aa13.54□□□□□ -0.24
NUP88-203ENST00000572019 CD3DP04234 171 aa13.54□□□□□ -0.24
NUP88-203ENST00000572019 NKX2-1P43699 371 aaPredicted RBP13.54□□□□□ -0.24
NUP88-203ENST00000572019 SPCS3P61009 180 aa13.54□□□□□ -0.24
NUP88-203ENST00000572019 C2orf83Q53S99 150 aa13.54□□□□□ -0.24
NUP88-203ENST00000572019 OR13C8Q8NGS7 320 aa13.54□□□□□ -0.24
NUP88-203ENST00000572019 ZNF486Q96H40 463 aaPredicted RBP13.54□□□□□ -0.24
NUP88-203ENST00000572019 LINC00052Q96N35 136 aa13.54□□□□□ -0.24
NUP88-203ENST00000572019 SAV1Q9H4B6 383 aaPredicted RBP13.54□□□□□ -0.24
NUP88-203ENST00000572019 SEPSECSQ9HD40 501 aaKnown RBP13.54□□□□□ -0.24
NUP88-203ENST00000572019 YTHDF2Q9Y5A9 579 aaKnown RBP13.54□□□□□ -0.24
NUP88-203ENST00000572019 RPS10-NUDT3A0A1W2PQS6 291 aa13.53□□□□□ -0.24
NUP88-203ENST00000572019 TMEM189A5PLL7 270 aa13.53□□□□□ -0.24
NUP88-203ENST00000572019 SOCS3O14543 225 aa13.53□□□□□ -0.24
NUP88-203ENST00000572019 SCGB2A1O75556 95 aa13.53□□□□□ -0.24
NUP88-203ENST00000572019 TOMM40O96008 361 aa13.53□□□□□ -0.24
NUP88-203ENST00000572019 APOA1P02647 267 aa13.53□□□□□ -0.24
NUP88-203ENST00000572019 PSG1P11464 419 aa13.53□□□□□ -0.24
NUP88-203ENST00000572019 HTR2BP41595 481 aa13.53□□□□□ -0.24
NUP88-203ENST00000572019 MEF2DQ14814 521 aa13.53□□□□□ -0.24
NUP88-203ENST00000572019 SOHLH1Q5JUK2 328 aa13.53□□□□□ -0.24
NUP88-203ENST00000572019 RRNAD1Q96FB5 475 aaKnown RBP13.53□□□□□ -0.24
NUP88-203ENST00000572019 ACY3Q96HD9 319 aa13.53□□□□□ -0.24
NUP88-203ENST00000572019 HEYLQ9NQ87 328 aaPredicted RBP13.53□□□□□ -0.24
NUP88-203ENST00000572019 OR5AC1P0C628 307 aa13.52□□□□□ -0.25
NUP88-203ENST00000572019 RD3LP0DJH9 198 aa13.52□□□□□ -0.25
NUP88-203ENST00000572019 NCS1P62166 190 aa13.52□□□□□ -0.25
NUP88-203ENST00000572019 RNASE10Q5GAN6 216 aaKnown RBP13.52□□□□□ -0.25
NUP88-203ENST00000572019 SLC24A4Q8NFF2 622 aa13.52□□□□□ -0.25
NUP88-203ENST00000572019 OR4B1Q8NGF8 309 aa13.52□□□□□ -0.25
NUP88-203ENST00000572019 OR52I2Q8NH67 350 aa13.52□□□□□ -0.25
NUP88-203ENST00000572019 RNASE11Q8TAA1 199 aaKnown RBP13.52□□□□□ -0.25
NUP88-203ENST00000572019 GPR146Q96CH1 333 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms