RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ANXA7P20073 488 aaKnown RBP11.2□□□□□ -0.62
VPS39-210ENST00000568357 RND2P52198 227 aa11.2□□□□□ -0.62
VPS39-210ENST00000568357 UBE2MP61081 183 aaKnown RBP11.2□□□□□ -0.62
VPS39-210ENST00000568357 FAM90A2PQ658T7 463 aa11.2□□□□□ -0.62
VPS39-210ENST00000568357 ST8SIA2Q92186 375 aa11.2□□□□□ -0.62
VPS39-210ENST00000568357 C7orf50Q9BRJ6 194 aaKnown RBP11.2□□□□□ -0.62
VPS39-210ENST00000568357 UBQLN2Q9UHD9 624 aa11.2□□□□□ -0.62
VPS39-210ENST00000568357 STARD9Q9P2P6 4700 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 TRAV30A0A087WSZ9 112 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 IGHV3-66A0A0C4DH42 116 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 LCE6AA0A183 80 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 OR4E1P0C645 316 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 IGLC1P0CG04 106 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 SLC25A4P12235 298 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 DHRS2Q13268 280 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 GGNBP1Q5YKI7 109 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 NOXA1Q86UR1 476 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 NPIPB3Q92617 1050 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 SPATA25Q9BR10 227 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 GINS3Q9BRX5 216 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 VSIRQ9H7M9 311 aa11.19□□□□□ -0.62
VPS39-210ENST00000568357 STAB2Q8WWQ8 2551 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 IGKV3-7A0A075B6H7 116 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 MPTX1A8MV57 137 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 ADAP1O75689 374 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 IAPPP10997 89 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 OR10J1P30954 320 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 CNPY1Q3B7I2 92 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 ODF3L2Q3SX64 289 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 ETFRF1Q6IPR1 90 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 OR1S2Q8NGQ3 325 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 ACY3Q96HD9 319 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 MAGT1Q9H0U3 335 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 RETNQ9HD89 108 aa11.18□□□□□ -0.62
VPS39-210ENST00000568357 OR4C46A6NHA9 309 aa11.17□□□□□ -0.62
VPS39-210ENST00000568357 FAM90A26D6RGX4 464 aa11.17□□□□□ -0.62
VPS39-210ENST00000568357 LYRM1O43325 122 aa11.17□□□□□ -0.62
VPS39-210ENST00000568357 DFFBO76075 338 aa11.17□□□□□ -0.62
VPS39-210ENST00000568357 IFNA4P05014 189 aa11.17□□□□□ -0.62
VPS39-210ENST00000568357 NPPCP23582 126 aa11.17□□□□□ -0.62
VPS39-210ENST00000568357 TFPI2P48307 235 aa11.17□□□□□ -0.62
VPS39-210ENST00000568357 ATP5IP56385 69 aaPredicted RBP11.17□□□□□ -0.62
VPS39-210ENST00000568357 YPEL3P61236 119 aaPredicted RBP11.17□□□□□ -0.62
VPS39-210ENST00000568357 TCF24Q7RTU0 167 aa11.17□□□□□ -0.62
VPS39-210ENST00000568357 LYG2Q86SG7 212 aa11.17□□□□□ -0.62
VPS39-210ENST00000568357 GBGT1Q8N5D6 347 aa11.17□□□□□ -0.62
VPS39-210ENST00000568357 CSMD3Q7Z407 3707 aa11.17□□□□□ -0.62
VPS39-210ENST00000568357 SYNGR2O43760 224 aa11.16□□□□□ -0.62
VPS39-210ENST00000568357 SCGB2A1O75556 95 aa11.16□□□□□ -0.62
VPS39-210ENST00000568357 CRYBB3P26998 211 aa11.16□□□□□ -0.62
VPS39-210ENST00000568357 GPX4P36969 197 aaPredicted RBP11.16□□□□□ -0.62
VPS39-210ENST00000568357 C4orf46Q504U0 113 aa11.16□□□□□ -0.62
VPS39-210ENST00000568357 LINC00299Q6ZSB3 139 aa11.16□□□□□ -0.62
VPS39-210ENST00000568357 COQ8AQ8NI60 647 aa11.16□□□□□ -0.62
VPS39-210ENST00000568357 Q8WTZ3 238 aa11.16□□□□□ -0.62
VPS39-210ENST00000568357 LOC102724200A0A096LPH7 203 aaPredicted RBP11.15□□□□□ -0.62
VPS39-210ENST00000568357 MED6O75586 246 aa11.15□□□□□ -0.62
VPS39-210ENST00000568357 ID3Q02535 119 aa11.15□□□□□ -0.62
VPS39-210ENST00000568357 GAMTQ14353 236 aa11.15□□□□□ -0.62
VPS39-210ENST00000568357 MUC7Q8TAX7 377 aa11.15□□□□□ -0.62
VPS39-210ENST00000568357 METTL26Q96S19 204 aa11.15□□□□□ -0.62
VPS39-210ENST00000568357 FAM110AQ9BQ89 295 aa11.15□□□□□ -0.62
VPS39-210ENST00000568357 CCDC32Q9BV29 185 aa11.15□□□□□ -0.62
VPS39-210ENST00000568357 GGTLC1Q9BX51 225 aa11.15□□□□□ -0.62
VPS39-210ENST00000568357 EDA2RQ9HAV5 297 aa11.15□□□□□ -0.62
VPS39-210ENST00000568357 U3KQE9 123 aa11.15□□□□□ -0.62
VPS39-210ENST00000568357 WRBO00258 174 aa11.14□□□□□ -0.63
VPS39-210ENST00000568357 TCRBP04435 133 aa11.14□□□□□ -0.63
VPS39-210ENST00000568357 CD5P06127 495 aa11.14□□□□□ -0.63
VPS39-210ENST00000568357 RD3LP0DJH9 198 aa11.14□□□□□ -0.63
VPS39-210ENST00000568357 BMI1P35226 326 aa11.14□□□□□ -0.63
VPS39-210ENST00000568357 ZNF124Q15973 351 aa11.14□□□□□ -0.63
VPS39-210ENST00000568357 WFDC3Q8IUB2 231 aa11.14□□□□□ -0.63
VPS39-210ENST00000568357 APRG1Q8IVJ8 170 aa11.14□□□□□ -0.63
VPS39-210ENST00000568357 C20orf85Q9H1P6 137 aa11.14□□□□□ -0.63
VPS39-210ENST00000568357 MS4A6AQ9H2W1 248 aa11.14□□□□□ -0.63
VPS39-210ENST00000568357 PAIP2BQ9ULR5 123 aaKnown RBP11.14□□□□□ -0.63
VPS39-210ENST00000568357 IGKV1D-37A0A075B6S9 117 aa11.13□□□□□ -0.63
VPS39-210ENST00000568357 TRAV6A0A075B6T7 132 aa11.13□□□□□ -0.63
VPS39-210ENST00000568357 A0A1W2PS18 150 aa11.13□□□□□ -0.63
VPS39-210ENST00000568357 TOMM40O96008 361 aa11.13□□□□□ -0.63
VPS39-210ENST00000568357 PSG1P11464 419 aa11.13□□□□□ -0.63
VPS39-210ENST00000568357 RAB11AP62491 216 aa11.13□□□□□ -0.63
VPS39-210ENST00000568357 RPL11P62913 178 aaKnown RBP11.13□□□□□ -0.63
VPS39-210ENST00000568357 USF2Q15853 346 aaPredicted RBP11.13□□□□□ -0.63
VPS39-210ENST00000568357 OR4D5Q8NGN0 318 aa11.13□□□□□ -0.63
VPS39-210ENST00000568357 MITD1Q8WV92 249 aa11.13□□□□□ -0.63
VPS39-210ENST00000568357 CIB3Q96Q77 187 aaPredicted RBP11.13□□□□□ -0.63
VPS39-210ENST00000568357 HERC2O95714 4834 aa11.13□□□□□ -0.63
VPS39-210ENST00000568357 PRSS46E5RG02 174 aa11.12□□□□□ -0.63
VPS39-210ENST00000568357 IFNA21P01568 189 aa11.12□□□□□ -0.63
VPS39-210ENST00000568357 IL4P05112 153 aa11.12□□□□□ -0.63
VPS39-210ENST00000568357 P2RY1P47900 373 aa11.12□□□□□ -0.63
VPS39-210ENST00000568357 POLR2GP62487 172 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS39-210ENST00000568357 PAFAH1B2P68402 229 aa11.12□□□□□ -0.63
VPS39-210ENST00000568357 ZNF90Q03938 601 aa11.12□□□□□ -0.63
VPS39-210ENST00000568357 SPANXN5Q5MJ07 72 aa11.12□□□□□ -0.63
VPS39-210ENST00000568357 FAM24BQ8N5W8 94 aa11.12□□□□□ -0.63
VPS39-210ENST00000568357 S100ZQ8WXG8 99 aa11.12□□□□□ -0.63
VPS39-210ENST00000568357 TMEM231Q9H6L2 316 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms