RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 OR10G9Q8NGN4 311 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 OR10G7Q8NGN6 311 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 OR4A5Q8NH83 315 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 OR9G1Q8NH87 305 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 CLDND2Q8NHS1 167 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 VSTM2AQ8TAG5 236 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 ZNF596Q8TC21 504 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 RXFP4Q8TDU9 374 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 NEUROG1Q92886 237 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 TNFRSF14Q92956 283 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 LHX4Q969G2 390 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 HARBI1Q96MB7 349 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 P2RX4Q99571 388 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 RARRES2Q99969 163 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 NIPSNAP3BQ9BS92 247 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 PCGF1Q9BSM1 259 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 MAP1LC3BQ9GZQ8 125 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 TUBA4BQ9H853 241 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 NPVFQ9HCQ7 196 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 TMEM14BQ9NUH8 114 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 GNG13Q9P2W3 67 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 MIOXQ9UGB7 285 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 MLXQ9UH92 298 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 VAX2Q9UIW0 290 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 ZNF257Q9Y2Q1 563 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 OR51B2Q9Y5P1 312 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 RYR2Q92736 4967 aa4.73□□□□□ -1.65
VPS39-209ENST00000568029 NOTCH1P46531 2555 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 A0A096LNT2 108 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 TRAV3A0A0B4J244 114 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 C7orf77A4D0Y5 90 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 B4DEV8 164 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 FNDC10F2Z333 226 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 J3QR06 171 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 MMP23AO75900 390 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 GAGE7O76087 117 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 GAGE12FP0CL80 117 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 GAGE12GP0CL81 117 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 GAGE12IP0CL82 117 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 BCL2P10415 239 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 CCL3L1P16619 93 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 MDKP21741 143 aaPredicted RBP4.72□□□□□ -1.65
VPS39-209ENST00000568029 NPY1RP25929 384 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 PSMB3P49720 205 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 COMPP49747 757 aaPredicted RBP4.72□□□□□ -1.65
VPS39-209ENST00000568029 RAB13P51153 203 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 CEBPGP53567 150 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 ERHP84090 104 aaKnown RBP4.72□□□□□ -1.65
VPS39-209ENST00000568029 FLI1Q01543 452 aaPredicted RBP4.72□□□□□ -1.65
VPS39-209ENST00000568029 GAGE1Q13065 139 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 GAGE4Q13068 117 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 CLEC12BQ2HXU8 276 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 TMEM155Q4W5P6 130 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 AKIRIN2Q53H80 203 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 SPINK9Q5DT21 86 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 FAM122CQ6P4D5 195 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 PQLC2Q6ZP29 291 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 ABHD12Q8N2K0 398 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 RPP25LQ8N5L8 163 aaKnown RBP4.72□□□□□ -1.65
VPS39-209ENST00000568029 OR1L8Q8NGR8 309 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 OR5B3Q8NH48 314 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 RAB1CQ92928 201 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 FLYWCH2Q96CP2 140 aaKnown RBP4.72□□□□□ -1.65
VPS39-209ENST00000568029 TVP23CQ96ET8 276 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 TIMD4Q96H15 378 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 TMEM204Q9BSN7 226 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 HINT2Q9BX68 163 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 NPCDR1Q9BY65 106 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 PLEKHA3Q9HB20 300 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 MANBALQ9NQG1 85 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 CBLN4Q9NTU7 201 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 BET1LQ9NYM9 111 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 WDR83OSQ9Y284 106 aa4.72□□□□□ -1.65
VPS39-209ENST00000568029 PUS1Q9Y606 427 aaKnown RBP eCLIP4.72□□□□□ -1.65
VPS39-209ENST00000568029 A0A087WWC5 75 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 TEX50A0A1B0GTY4 177 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 A0A1W2PN81 502 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 A0A1W2PPV4 95 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 ZFP92A6NM28 416 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 H0YJW9 148 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 H3BQ15 152 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 TIMM23O14925 209 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 RBP4P02753 201 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 MT-ND4LP03901 98 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 IGHV1-8P0DP01 117 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 TMEM11P17152 192 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 USF1P22415 310 aaPredicted RBP4.71□□□□□ -1.66
VPS39-209ENST00000568029 COL8A2P25067 703 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 PAX6P26367 422 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 CHRNA7P36544 502 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 OPRK1P41145 380 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 LGALS7P47929 136 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 ZNF137PP52743 207 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 SUB1P53999 127 aaKnown RBP eCLIP4.71□□□□□ -1.66
VPS39-209ENST00000568029 ATP5J2P56134 94 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 DLX6P56179 175 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 PRCDQ00LT1 54 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 PNRC1Q12796 327 aaPredicted RBP4.71□□□□□ -1.66
VPS39-209ENST00000568029 ZNF726P1Q15940 193 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 TMEM249Q2WGJ8 235 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms