RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 MRPL27Q9P0M9 148 aaKnown RBP7.36□□□□□ -1.23
CLN3-220ENST00000566040 SMPXQ9UHP9 88 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 PUS1Q9Y606 427 aaKnown RBP eCLIP7.36□□□□□ -1.23
CLN3-220ENST00000566040 STARD9Q9P2P6 4700 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 DYNC2H1Q8NCM8 4307 aaKnown RBP7.35□□□□□ -1.23
CLN3-220ENST00000566040 IGHV3OR16-13A0A075B7E8 117 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 IGHV3-74A0A0B4J1X5 117 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 C7orf66A4D0T2 115 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 A8MZ25 164 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 NUPL2O15504 423 aaKnown RBP7.35□□□□□ -1.23
CLN3-220ENST00000566040 SSSCA1O60232 199 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 IFNA10P01566 189 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 FRMD6-AS1P0C7T7 363 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 IGHV4-30-4P0DP06 118 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 NPBWR1P48145 328 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 SUB1P53999 127 aaKnown RBP eCLIP7.35□□□□□ -1.23
CLN3-220ENST00000566040 ODF3L2Q3SX64 289 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 LCN12Q6JVE5 192 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 MZT2BQ6NZ67 158 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 TMEM182Q6ZP80 229 aaPredicted RBP7.35□□□□□ -1.23
CLN3-220ENST00000566040 THAP8Q8NA92 274 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 MARC2Q969Z3 335 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 C17orf77Q96MU5 243 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 RNF2Q99496 336 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 C20orf24Q9BUV8 137 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 HIPK2Q9H2X6 1198 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 TECRQ9NZ01 308 aaKnown RBP7.35□□□□□ -1.23
CLN3-220ENST00000566040 UFC1Q9Y3C8 167 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 LYSTQ99698 3801 aa7.35□□□□□ -1.23
CLN3-220ENST00000566040 H0YIZ8 118 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 K7EPK0 472 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 SIX6O95475 246 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 LY86O95711 162 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 SLC25A4P12235 298 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 CRYBB3P26998 211 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 OR10J1P30954 320 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 NKX2-1P43699 371 aaPredicted RBP7.34□□□□□ -1.23
CLN3-220ENST00000566040 H2BFSP57053 126 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 YPEL3P61236 119 aaPredicted RBP7.34□□□□□ -1.23
CLN3-220ENST00000566040 ZNF90Q03938 601 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 RELQ04864 619 aaPredicted RBP7.34□□□□□ -1.23
CLN3-220ENST00000566040 TATDN3Q17R31 274 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 ACOT7LQ6ZUV0 252 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 SBSPONQ8IVN8 264 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 FAM24BQ8N5W8 94 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 OR1S2Q8NGQ3 325 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 ENKURQ8TC29 256 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 ACY3Q96HD9 319 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 SMIM8Q96KF7 97 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 GAR1Q9NY12 217 aaKnown RBP7.34□□□□□ -1.23
CLN3-220ENST00000566040 CACFD1Q9UGQ2 172 aa7.34□□□□□ -1.23
CLN3-220ENST00000566040 PIGBOS1A0A0B4J2F0 54 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 RBMY1BA6NDE4 496 aaKnown RBP7.33□□□□□ -1.24
CLN3-220ENST00000566040 RBMY1EA6NEQ0 496 aaKnown RBP7.33□□□□□ -1.24
CLN3-220ENST00000566040 INMT-MINDY4F8WBC2 141 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 TSPAN4O14817 238 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 TOMM40O96008 361 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 RBMY1DP0C7P1 496 aaKnown RBP7.33□□□□□ -1.24
CLN3-220ENST00000566040 PSG1P11464 419 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 GPX4P36969 197 aaPredicted RBP7.33□□□□□ -1.24
CLN3-220ENST00000566040 ATP5IP56385 69 aaPredicted RBP7.33□□□□□ -1.24
CLN3-220ENST00000566040 SPANXN5Q5MJ07 72 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 DYNLRB2Q8TF09 96 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 GLMPQ8WWB7 406 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 C2orf50Q96LR7 162 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 RHPN1-AS1Q9BWJ2 59 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 PALMDQ9NP74 551 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 SMAD5-AS1Q9Y6J3 95 aa7.33□□□□□ -1.24
CLN3-220ENST00000566040 TRAV25A0A0B4J276 109 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 IGHV3-66A0A0C4DH42 116 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 RPS10-NUDT3A0A1W2PQS6 291 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 SNRPGP15A8MWD9 76 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 MED6O75586 246 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 CD81P60033 236 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 RAB32Q13637 225 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 ZNF124Q15973 351 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 DEFB121Q5J5C9 76 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 GSG1LQ6UXU4 331 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 DEFB125Q8N687 156 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 CIB3Q96Q77 187 aaPredicted RBP7.32□□□□□ -1.24
CLN3-220ENST00000566040 ASCL2Q99929 193 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 NEURL2Q9BR09 285 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 PSENENQ9NZ42 101 aa7.32□□□□□ -1.24
CLN3-220ENST00000566040 ZMAT5Q9UDW3 170 aaKnown RBP7.32□□□□□ -1.24
CLN3-220ENST00000566040 TRAV14DV4A0A0A6YYC5 116 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 IGSF23A1L1A6 192 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 TSC22D2O75157 780 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 DFFBO76075 338 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 SCGB1D2O95969 90 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 IFNA21P01568 189 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 IFNA4P05014 189 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 METTL15P1P0C7V9 234 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 GATA2P23769 480 aaPredicted RBP7.31□□□□□ -1.24
CLN3-220ENST00000566040 TAS2R30P59541 319 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 TRGV9Q99603 122 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 TM2D3Q9BRN9 247 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 GSKIPQ9P0R6 139 aa7.31□□□□□ -1.24
CLN3-220ENST00000566040 STRAPQ9Y3F4 350 aaKnown RBP7.31□□□□□ -1.24
CLN3-220ENST00000566040 KMT2CQ8NEZ4 4911 aaKnown RBP7.3□□□□□ -1.24
CLN3-220ENST00000566040 TENM2Q9NT68 2774 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms