RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SMR3AQ99954 134 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 CHRDL1Q9BU40 450 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 COL4A2P08572 1712 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 TRBV6-6A0A0A6YYG2 114 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 CXorf1O96002 111 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 MFAP2P55001 183 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 NDUFA6P56556 154 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 SERF2P84101 59 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 TMEM177Q53S58 311 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 ZNF660Q6AZW8 331 aaPredicted RBP7.45□□□□□ -1.22
VPS39-205ENST00000562258 C9orf62Q8N4C0 152 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 TRAV14DV4A0A0A6YYC5 116 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 HELTA6NFD8 242 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 OVOL3O00110 214 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 CTRB1P17538 263 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 LMO4P61968 165 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 CTRB2Q6GPI1 263 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 ZNF429Q86V71 674 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 TMEM167AQ8TBQ9 72 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 TMPRSS5Q9H3S3 457 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 SMCO4Q9NRQ5 59 aa7.45□□□□□ -1.22
VPS39-205ENST00000562258 FLNCQ14315 2725 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 WIPF3A6NGB9 483 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 IL6RP08887 468 aaPredicted RBP7.44□□□□□ -1.22
VPS39-205ENST00000562258 ARL14EPLP0DKL9 152 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 MMP9P14780 707 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 ZP3P21754 424 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 OR51M1Q9H341 326 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 TANC2Q9HCD6 1990 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 RBFOX3A6NFN3 312 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 HTN3P15516 51 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 CD81P60033 236 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 CD69Q07108 199 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 KHDC3LQ587J8 217 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 ZNF562Q6V9R5 426 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 KLHDC1Q8N7A1 406 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 GATAD1Q8WUU5 269 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 FOXI3A8MTJ6 420 aaPredicted RBP7.44□□□□□ -1.22
VPS39-205ENST00000562258 RPL15P61313 204 aaKnown RBP7.44□□□□□ -1.22
VPS39-205ENST00000562258 GOLT1AQ6ZVE7 132 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 SAMD10Q9BYL1 202 aa7.44□□□□□ -1.22
VPS39-205ENST00000562258 A0A1W2PPI3 338 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 H0YIZ8 118 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 NBEAP1P0C6P0 100 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 SEC11BP0C7V7 166 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 PAX1P15863 534 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 ID3Q02535 119 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 GCSAMLQ5JQS6 135 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 PQLC2Q6ZP29 291 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 RNF125Q96EQ8 232 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 GATCO43716 136 aaKnown RBP7.43□□□□□ -1.22
VPS39-205ENST00000562258 NDUFB4O95168 129 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 GPX1P07203 203 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 HOXB4P17483 251 aaPredicted RBP7.43□□□□□ -1.22
VPS39-205ENST00000562258 MAS1LP35410 378 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 DLK1P80370 383 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 RELBQ01201 579 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 WDR61Q9GZS3 305 aaKnown RBP7.43□□□□□ -1.22
VPS39-205ENST00000562258 PEMTQ9UBM1 199 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 SOX21Q9Y651 276 aaPredicted RBP7.43□□□□□ -1.22
VPS39-205ENST00000562258 SRRM4A7MD48 611 aaKnown RBP7.43□□□□□ -1.22
VPS39-205ENST00000562258 C1orf196B1AJZ1 125 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 PPP5D1E7EU14 171 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 CFDP00746 253 aaPredicted RBP7.43□□□□□ -1.22
VPS39-205ENST00000562258 ZNF688P0C7X2 276 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 TMEM241Q24JQ0 296 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 LDLRAD2Q5SZI1 272 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 ZNF600Q6ZNG1 722 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 RNASEH2CQ8TDP1 164 aaKnown RBP7.43□□□□□ -1.22
VPS39-205ENST00000562258 TBX15Q96SF7 602 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 NPCDR1Q9BY65 106 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 RNF114Q9Y508 228 aa7.43□□□□□ -1.22
VPS39-205ENST00000562258 GCN1Q92616 2671 aaKnown RBP7.42□□□□□ -1.22
VPS39-205ENST00000562258 CRYBB3P26998 211 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 FABP9Q0Z7S8 132 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 DEFB136Q30KP8 78 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 TMEM144Q7Z5S9 345 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 CACNG8Q8WXS5 425 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 RAX2Q96IS3 184 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 IFT22Q9H7X7 185 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 PTPRBP23467 1997 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 ELOA3CA0A087WX78 387 aaPredicted RBP7.42□□□□□ -1.22
VPS39-205ENST00000562258 TRAV34A0A0B4J273 112 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 SFTA3P0C7M3 94 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 C5orf17Q8NAS9 161 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 OR1P1Q8NH06 330 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 C2CD4CQ8TF44 421 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 DMXL1Q9Y485 3027 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 PSG1P11464 419 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 RRN3P1Q2M238 152 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 KRTAP27-1Q3LI81 207 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 LY6G6FQ5SQ64 297 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 OR5AN1Q8NGI8 311 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 AQP10Q96PS8 301 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 ZZEF1O43149 2961 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 STAB1Q9NY15 2570 aa7.42□□□□□ -1.22
VPS39-205ENST00000562258 GGCTO75223 188 aaKnown RBP7.41□□□□□ -1.22
VPS39-205ENST00000562258 RAB5BP61020 215 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 MIR17HGQ75NE6 70 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 BAGE3Q86Y29 109 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms