RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CACNG8Q8WXS5 425 aa16.58■□□□□ 0.24
SNX1-210ENST00000560260 SLC35E1Q96K37 410 aa16.58■□□□□ 0.24
SNX1-210ENST00000560260 IGKV1OR2-108A0A075B7D4 117 aa16.57■□□□□ 0.24
SNX1-210ENST00000560260 IGHV3OR16-8A0A075B7F1 116 aa16.57■□□□□ 0.24
SNX1-210ENST00000560260 TMEM213A2RRL7 107 aa16.57■□□□□ 0.24
SNX1-210ENST00000560260 NDUFA4O00483 81 aa16.57■□□□□ 0.24
SNX1-210ENST00000560260 CSN3P07498 182 aa16.57■□□□□ 0.24
SNX1-210ENST00000560260 OR10J1P30954 320 aa16.57■□□□□ 0.24
SNX1-210ENST00000560260 Q6ZNX1 250 aa16.57■□□□□ 0.24
SNX1-210ENST00000560260 TMEM252Q8N6L7 170 aa16.57■□□□□ 0.24
SNX1-210ENST00000560260 NBEAL1Q6ZS30 2694 aa16.56■□□□□ 0.24
SNX1-210ENST00000560260 ZNF320A2RRD8 509 aa16.56■□□□□ 0.24
SNX1-210ENST00000560260 A8MWP6 167 aa16.56■□□□□ 0.24
SNX1-210ENST00000560260 E5RGE8 158 aa16.56■□□□□ 0.24
SNX1-210ENST00000560260 CST7O76096 145 aa16.56■□□□□ 0.24
SNX1-210ENST00000560260 GIPP09681 153 aaPredicted RBP16.56■□□□□ 0.24
SNX1-210ENST00000560260 FAM106AQ4KMX7 169 aa16.56■□□□□ 0.24
SNX1-210ENST00000560260 OR1S2Q8NGQ3 325 aa16.56■□□□□ 0.24
SNX1-210ENST00000560260 CHAC2Q8WUX2 184 aa16.56■□□□□ 0.24
SNX1-210ENST00000560260 MCRIP2Q9BUT9 160 aaKnown RBP16.56■□□□□ 0.24
SNX1-210ENST00000560260 MBD2Q9UBB5 411 aa16.56■□□□□ 0.24
SNX1-210ENST00000560260 RELQ04864 619 aaPredicted RBP16.55■□□□□ 0.24
SNX1-210ENST00000560260 TM4SF20Q53R12 229 aa16.55■□□□□ 0.24
SNX1-210ENST00000560260 Q5BKY6 102 aa16.55■□□□□ 0.24
SNX1-210ENST00000560260 C9orf66Q5T8R8 295 aa16.55■□□□□ 0.24
SNX1-210ENST00000560260 ZNF600Q6ZNG1 722 aa16.55■□□□□ 0.24
SNX1-210ENST00000560260 ZFAND3Q9H8U3 227 aa16.55■□□□□ 0.24
SNX1-210ENST00000560260 C2orf70A6NJV1 201 aa16.54■□□□□ 0.24
SNX1-210ENST00000560260 WIPF1O43516 503 aa16.54■□□□□ 0.24
SNX1-210ENST00000560260 SAP30O75446 220 aa16.54■□□□□ 0.24
SNX1-210ENST00000560260 RLN2P04090 185 aa16.54■□□□□ 0.24
SNX1-210ENST00000560260 DLK1P80370 383 aa16.54■□□□□ 0.24
SNX1-210ENST00000560260 TOMM20LQ6UXN7 152 aa16.54■□□□□ 0.24
SNX1-210ENST00000560260 THAP8Q8NA92 274 aa16.54■□□□□ 0.24
SNX1-210ENST00000560260 OR10P1Q8NGE3 313 aa16.54■□□□□ 0.24
SNX1-210ENST00000560260 PUS1Q9Y606 427 aaKnown RBP eCLIP16.54■□□□□ 0.24
SNX1-210ENST00000560260 TRAV30A0A087WSZ9 112 aa16.53■□□□□ 0.24
SNX1-210ENST00000560260 ZNF207O43670 478 aaKnown RBP16.53■□□□□ 0.24
SNX1-210ENST00000560260 LYL1P12980 280 aa16.53■□□□□ 0.24
SNX1-210ENST00000560260 P2RY1P47900 373 aa16.53■□□□□ 0.24
SNX1-210ENST00000560260 SULT1A1P50225 295 aa16.53■□□□□ 0.24
SNX1-210ENST00000560260 SLC38A11Q08AI6 406 aa16.53■□□□□ 0.24
SNX1-210ENST00000560260 BEAN1Q3B7T3 259 aa16.53■□□□□ 0.24
SNX1-210ENST00000560260 C20orf24Q9BUV8 137 aa16.53■□□□□ 0.24
SNX1-210ENST00000560260 PEMTQ9UBM1 199 aa16.53■□□□□ 0.24
SNX1-210ENST00000560260 NOTCH1P46531 2555 aa16.52■□□□□ 0.24
SNX1-210ENST00000560260 G3V3Q6 166 aa16.52■□□□□ 0.24
SNX1-210ENST00000560260 EWSR1Q01844 656 aaKnown RBP eCLIP16.52■□□□□ 0.24
SNX1-210ENST00000560260 ZNF90Q03938 601 aa16.52■□□□□ 0.24
SNX1-210ENST00000560260 AKR1C1Q04828 323 aa16.52■□□□□ 0.24
SNX1-210ENST00000560260 TMEM217Q8N7C4 229 aa16.52■□□□□ 0.24
SNX1-210ENST00000560260 ELOVL1Q9BW60 279 aa16.52■□□□□ 0.24
SNX1-210ENST00000560260 SMCO3A2RU48 225 aa16.51■□□□□ 0.23
SNX1-210ENST00000560260 ZFP92A6NM28 416 aa16.51■□□□□ 0.23
SNX1-210ENST00000560260 YIF1AO95070 293 aa16.51■□□□□ 0.23
SNX1-210ENST00000560260 PET100P0DJ07 73 aa16.51■□□□□ 0.23
SNX1-210ENST00000560260 FOLR2P14207 255 aa16.51■□□□□ 0.23
SNX1-210ENST00000560260 YPEL3P61236 119 aaPredicted RBP16.51■□□□□ 0.23
SNX1-210ENST00000560260 SIGLEC8Q9NYZ4 499 aa16.51■□□□□ 0.23
SNX1-210ENST00000560260 UFC1Q9Y3C8 167 aa16.51■□□□□ 0.23
SNX1-210ENST00000560260 SELENOKQ9Y6D0 94 aa16.51■□□□□ 0.23
SNX1-210ENST00000560260 FNDC10F2Z333 226 aa16.5■□□□□ 0.23
SNX1-210ENST00000560260 SCAF4O95104 1147 aaKnown RBP16.5■□□□□ 0.23
SNX1-210ENST00000560260 ELLP55199 621 aaPredicted RBP16.5■□□□□ 0.23
SNX1-210ENST00000560260 KRTAP10-11P60412 298 aa16.5■□□□□ 0.23
SNX1-210ENST00000560260 RAP2BP61225 183 aa16.5■□□□□ 0.23
SNX1-210ENST00000560260 NHLH2Q02577 135 aa16.5■□□□□ 0.23
SNX1-210ENST00000560260 KPRPQ5T749 579 aaPredicted RBP16.5■□□□□ 0.23
SNX1-210ENST00000560260 TMEM144Q7Z5S9 345 aa16.5■□□□□ 0.23
SNX1-210ENST00000560260 STX12Q86Y82 276 aa16.5■□□□□ 0.23
SNX1-210ENST00000560260 ASB13Q8WXK3 278 aa16.5■□□□□ 0.23
SNX1-210ENST00000560260 TRGV9Q99603 122 aa16.5■□□□□ 0.23
SNX1-210ENST00000560260 SCGB2A1O75556 95 aa16.49■□□□□ 0.23
SNX1-210ENST00000560260 TOMM40O96008 361 aa16.49■□□□□ 0.23
SNX1-210ENST00000560260 C8orf88P0DMB2 117 aa16.49■□□□□ 0.23
SNX1-210ENST00000560260 PSG1P11464 419 aa16.49■□□□□ 0.23
SNX1-210ENST00000560260 CBLN1P23435 193 aa16.49■□□□□ 0.23
SNX1-210ENST00000560260 TMEM182Q6ZP80 229 aaPredicted RBP16.49■□□□□ 0.23
SNX1-210ENST00000560260 GGACTQ9BVM4 153 aa16.49■□□□□ 0.23
SNX1-210ENST00000560260 GPR61Q9BZJ8 451 aa16.49■□□□□ 0.23
SNX1-210ENST00000560260 DAZ1Q9NQZ3 744 aaKnown RBP16.49■□□□□ 0.23
SNX1-210ENST00000560260 K7EMT4 169 aa16.48■□□□□ 0.23
SNX1-210ENST00000560260 IGLV1-51P01701 117 aa16.48■□□□□ 0.23
SNX1-210ENST00000560260 INSL3P51460 131 aa16.48■□□□□ 0.23
SNX1-210ENST00000560260 EGFEM1PQ0D2K5 195 aa16.48■□□□□ 0.23
SNX1-210ENST00000560260 OR2F1Q13607 317 aa16.48■□□□□ 0.23
SNX1-210ENST00000560260 VWC2Q2TAL6 325 aa16.48■□□□□ 0.23
SNX1-210ENST00000560260 MLXQ9UH92 298 aa16.48■□□□□ 0.23
SNX1-210ENST00000560260 IGHV3-49A0A0A0MS15 119 aa16.47■□□□□ 0.23
SNX1-210ENST00000560260 USF2Q15853 346 aaPredicted RBP16.47■□□□□ 0.23
SNX1-210ENST00000560260 OR2T35Q8NGX2 323 aa16.47■□□□□ 0.23
SNX1-210ENST00000560260 THAP6Q8TBB0 222 aa16.47■□□□□ 0.23
SNX1-210ENST00000560260 SLC25A31Q9H0C2 315 aa16.47■□□□□ 0.23
SNX1-210ENST00000560260 NPVFQ9HCQ7 196 aa16.47■□□□□ 0.23
SNX1-210ENST00000560260 LSM4Q9Y4Z0 139 aaKnown RBP16.47■□□□□ 0.23
SNX1-210ENST00000560260 SMLR1H3BR10 107 aa16.46■□□□□ 0.23
SNX1-210ENST00000560260 APOHP02749 345 aaPredicted RBP16.46■□□□□ 0.23
SNX1-210ENST00000560260 RD3LP0DJH9 198 aa16.46■□□□□ 0.23
SNX1-210ENST00000560260 GATA2P23769 480 aaPredicted RBP16.46■□□□□ 0.23
SNX1-210ENST00000560260 S100A11P31949 105 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms