RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ARL2-SNX15V9GYD0 113 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 A0A087WWC5 75 aa13.39□□□□□ -0.27
LDLR-206ENST00000557958 APELAP0DMC3 54 aa13.39□□□□□ -0.27
LDLR-206ENST00000557958 SSBP2P81877 361 aaPredicted RBP13.39□□□□□ -0.27
LDLR-206ENST00000557958 CST9LP1Q5W188 147 aa13.39□□□□□ -0.27
LDLR-206ENST00000557958 MBD6Q96DN6 1003 aa13.39□□□□□ -0.27
LDLR-206ENST00000557958 TMEM167BQ9NRX6 74 aa13.39□□□□□ -0.27
LDLR-206ENST00000557958 MED13LQ71F56 2210 aa13.39□□□□□ -0.27
LDLR-206ENST00000557958 PTPN13Q12923 2485 aa13.39□□□□□ -0.27
LDLR-206ENST00000557958 COX7A2P2O60397 106 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 TRGV9Q99603 122 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 SLC25A33Q9BSK2 321 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 DNAJC4Q9NNZ3 241 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 TNFRSF19Q9NS68 423 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 NAT8Q9UHE5 227 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 NBPF19A0A087WUL8 3843 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 MSMBP08118 114 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 MFAP2P55001 183 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 FABP9Q0Z7S8 132 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 FAM24BQ8N5W8 94 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 ARPC1AQ92747 370 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 WNT10AQ9GZT5 417 aa13.38□□□□□ -0.27
LDLR-206ENST00000557958 ELOA3CA0A087WX78 387 aaPredicted RBP13.37□□□□□ -0.27
LDLR-206ENST00000557958 AP4M1O00189 453 aa13.37□□□□□ -0.27
LDLR-206ENST00000557958 OR2C1O95371 312 aa13.37□□□□□ -0.27
LDLR-206ENST00000557958 GATA2P23769 480 aaPredicted RBP13.37□□□□□ -0.27
LDLR-206ENST00000557958 UBE2G2P60604 165 aa13.37□□□□□ -0.27
LDLR-206ENST00000557958 ABCA12Q86UK0 2595 aa13.37□□□□□ -0.27
LDLR-206ENST00000557958 IGHV3OR16-10A0A075B7F0 116 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 CENPVL3A0A0U1RRI6 287 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 B4DSR2 109 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 FABP1P07148 127 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 C8orf88P0DMB2 117 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 TMEM241Q24JQ0 296 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 ZNF674Q2M3X9 581 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 C10orf113Q5VZT2 155 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 SPATA31B1PQ5VZV4 182 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 MIR17HGQ75NE6 70 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 RPUSD4Q96CM3 377 aaKnown RBP13.36□□□□□ -0.27
LDLR-206ENST00000557958 SDF2L1Q9HCN8 221 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 HIF1ANQ9NWT6 349 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 ANKRD17O75179 2603 aaKnown RBP13.36□□□□□ -0.27
LDLR-206ENST00000557958 IGKV1D-37A0A075B6S9 117 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 NPIPB5A8MRT5 1133 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 OR7C2O60412 319 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 CX3CL1P78423 397 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 OR4X1Q8NH49 305 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 UHRF2Q96PU4 802 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 PARLQ9H300 379 aa13.36□□□□□ -0.27
LDLR-206ENST00000557958 CXorf65A6NEN9 183 aa13.35□□□□□ -0.27
LDLR-206ENST00000557958 IGHV3-48P01763 117 aa13.35□□□□□ -0.27
LDLR-206ENST00000557958 WFDC11Q8NEX6 87 aa13.35□□□□□ -0.27
LDLR-206ENST00000557958 RASL11BQ9BPW5 248 aa13.35□□□□□ -0.27
LDLR-206ENST00000557958 C7orf69Q9H7B7 122 aa13.35□□□□□ -0.27
LDLR-206ENST00000557958 IGHV1-69DA0A0B4J2H0 117 aa13.34□□□□□ -0.27
LDLR-206ENST00000557958 TGFAP01135 160 aa13.34□□□□□ -0.27
LDLR-206ENST00000557958 IGHV1-69P01742 117 aa13.34□□□□□ -0.27
LDLR-206ENST00000557958 HLA-DRB1P01911 266 aa13.34□□□□□ -0.27
LDLR-206ENST00000557958 ZNF90Q03938 601 aa13.34□□□□□ -0.27
LDLR-206ENST00000557958 LINC01356Q8N9X3 169 aa13.34□□□□□ -0.27
LDLR-206ENST00000557958 TMEM37Q8WXS4 190 aa13.34□□□□□ -0.27
LDLR-206ENST00000557958 APCP25054 2843 aa13.34□□□□□ -0.27
LDLR-206ENST00000557958 A0A096LNT2 108 aa13.33□□□□□ -0.27
LDLR-206ENST00000557958 PSMB11A5LHX3 300 aa13.33□□□□□ -0.27
LDLR-206ENST00000557958 I3L2K1 104 aa13.33□□□□□ -0.27
LDLR-206ENST00000557958 GATA3P23771 443 aa13.33□□□□□ -0.27
LDLR-206ENST00000557958 ATP5G3P48201 142 aa13.33□□□□□ -0.27
LDLR-206ENST00000557958 LOXL1Q08397 574 aaPredicted RBP13.33□□□□□ -0.27
LDLR-206ENST00000557958 PRSS57Q6UWY2 283 aa13.33□□□□□ -0.27
LDLR-206ENST00000557958 KRTAP1-3Q8IUG1 177 aa13.33□□□□□ -0.27
LDLR-206ENST00000557958 AJUBAQ96IF1 538 aa13.33□□□□□ -0.27
LDLR-206ENST00000557958 THYN1Q9P016 225 aa13.33□□□□□ -0.27
LDLR-206ENST00000557958 MRPL36Q9P0J6 103 aaKnown RBP13.33□□□□□ -0.27
LDLR-206ENST00000557958 FASNP49327 2511 aaKnown RBP13.33□□□□□ -0.28
LDLR-206ENST00000557958 NAV3Q8IVL0 2385 aa13.33□□□□□ -0.28
LDLR-206ENST00000557958 SMAD7O15105 426 aaKnown RBP13.33□□□□□ -0.28
LDLR-206ENST00000557958 C19orf35Q6ZS72 473 aa13.33□□□□□ -0.28
LDLR-206ENST00000557958 PIP4P2Q8N4L2 257 aa13.33□□□□□ -0.28
LDLR-206ENST00000557958 TTC9CQ8N5M4 171 aa13.33□□□□□ -0.28
LDLR-206ENST00000557958 STXBP6Q8NFX7 210 aa13.33□□□□□ -0.28
LDLR-206ENST00000557958 OR51M1Q9H341 326 aa13.33□□□□□ -0.28
LDLR-206ENST00000557958 TMEM242Q9NWH2 141 aa13.33□□□□□ -0.28
LDLR-206ENST00000557958 Q8N9W7 124 aa13.32□□□□□ -0.28
LDLR-206ENST00000557958 FAM103A1Q9BTL3 118 aaKnown RBP13.32□□□□□ -0.28
LDLR-206ENST00000557958 CTDSP1Q9GZU7 261 aa13.32□□□□□ -0.28
LDLR-206ENST00000557958 DOK5Q9P104 306 aa13.32□□□□□ -0.28
LDLR-206ENST00000557958 DMRT1Q9Y5R6 373 aa13.32□□□□□ -0.28
LDLR-206ENST00000557958 TRAV20A0A0B4J274 112 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 TRAV40A0A0B4J280 105 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 SCGB2A1O75556 95 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 ADIRFQ15847 76 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 RBM14Q96PK6 669 aaKnown RBP13.31□□□□□ -0.28
LDLR-206ENST00000557958 MAP1AP78559 2803 aaPredicted RBP13.31□□□□□ -0.28
LDLR-206ENST00000557958 WNK2Q9Y3S1 2297 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 NAV2Q8IVL1 2488 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 IGHV3-21A0A0B4J1V1 117 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 HYPMO75409 117 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 FBLN7Q53RD9 439 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 RUSC1-AS1Q66K80 236 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 OR5AU1Q8NGC0 362 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 141.8 ms