RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 TAS2R20P59543 309 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 PRCDQ00LT1 54 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 KCTD21Q4G0X4 260 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 Q56UQ5 140 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 TMEM69Q5SWH9 247 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 PVRIGQ6DKI7 326 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 LPCAT3Q6P1A2 487 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 APRG1Q8IVJ8 170 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 UBAC2Q8NBM4 344 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 OR5H2Q8NGV7 314 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 MLST8Q9BVC4 326 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 HINT2Q9BX68 163 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 TM2D2Q9BX73 214 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 VSIRQ9H7M9 311 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 IGHV3OR16-8A0A075B7F1 116 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 TRAV14DV4A0A0A6YYC5 116 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 IGHV3-21A0A0B4J1V1 117 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 ZNF207O43670 478 aaKnown RBP7.28□□□□□ -1.24
SCFD1-220ENST00000556486 IGKV1-39P01597 117 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 IGKV1D-39P04432 117 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 S100GP29377 79 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 PRSS3P35030 304 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 HRH1P35367 487 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 HSPE1P61604 102 aaKnown RBP7.28□□□□□ -1.24
SCFD1-220ENST00000556486 TSPAN14Q8NG11 270 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 GPX8Q8TED1 209 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 SLC25A46Q96AG3 418 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 RARRES2Q99969 163 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 GINS3Q9BRX5 216 aa7.28□□□□□ -1.24
SCFD1-220ENST00000556486 ATP6V1G2O95670 118 aa7.27□□□□□ -1.25
SCFD1-220ENST00000556486 MT-CO2P00403 227 aa7.27□□□□□ -1.25
SCFD1-220ENST00000556486 PMP2P02689 132 aa7.27□□□□□ -1.25
SCFD1-220ENST00000556486 P0C879 139 aa7.27□□□□□ -1.25
SCFD1-220ENST00000556486 PAFAH1B2P68402 229 aa7.27□□□□□ -1.25
SCFD1-220ENST00000556486 NEDD8Q15843 81 aa7.27□□□□□ -1.25
SCFD1-220ENST00000556486 TOMM20LQ6UXN7 152 aa7.27□□□□□ -1.25
SCFD1-220ENST00000556486 SAMD12Q8N8I0 201 aa7.27□□□□□ -1.25
SCFD1-220ENST00000556486 OR11H2Q8NH07 326 aa7.27□□□□□ -1.25
SCFD1-220ENST00000556486 RRNAD1Q96FB5 475 aaKnown RBP7.27□□□□□ -1.25
SCFD1-220ENST00000556486 GNG7O60262 68 aa7.26□□□□□ -1.25
SCFD1-220ENST00000556486 YIF1AO95070 293 aa7.26□□□□□ -1.25
SCFD1-220ENST00000556486 APOA1P02647 267 aa7.26□□□□□ -1.25
SCFD1-220ENST00000556486 NPBWR1P48145 328 aa7.26□□□□□ -1.25
SCFD1-220ENST00000556486 RND3P61587 244 aa7.26□□□□□ -1.25
SCFD1-220ENST00000556486 PHLDA2Q53GA4 152 aa7.26□□□□□ -1.25
SCFD1-220ENST00000556486 TMEM41BQ5BJD5 291 aa7.26□□□□□ -1.25
SCFD1-220ENST00000556486 TCF24Q7RTU0 167 aa7.26□□□□□ -1.25
SCFD1-220ENST00000556486 H2BFWTQ7Z2G1 175 aa7.26□□□□□ -1.25
SCFD1-220ENST00000556486 OR4A16Q8NH70 328 aa7.26□□□□□ -1.25
SCFD1-220ENST00000556486 A4D1N5 150 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 CORTO00230 105 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 HLA-DMAP28067 261 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 RCVRNP35243 200 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 ERHP84090 104 aaKnown RBP7.25□□□□□ -1.25
SCFD1-220ENST00000556486 TMEM187Q14656 261 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 ZNF600Q6ZNG1 722 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 MAPKAPK5-AS1Q8N8E1 139 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 Q8NAQ8 132 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 DUSP18Q8NEJ0 188 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 MRGPRFQ96AM1 343 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 YIPF6Q96EC8 236 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 ZNF486Q96H40 463 aaPredicted RBP7.25□□□□□ -1.25
SCFD1-220ENST00000556486 MS4A6AQ9H2W1 248 aa7.25□□□□□ -1.25
SCFD1-220ENST00000556486 IGHV4-4A0A075B6R2 117 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 IGHV3-49A0A0A0MS15 119 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 A0A0B4J293 547 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 C11orf94C9JXX5 98 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 CA1P00915 261 aaPredicted RBP7.24□□□□□ -1.25
SCFD1-220ENST00000556486 APOHP02749 345 aaPredicted RBP7.24□□□□□ -1.25
SCFD1-220ENST00000556486 EIF4EP06730 217 aaKnown RBP7.24□□□□□ -1.25
SCFD1-220ENST00000556486 GIG44P09565 113 aaPredicted RBP7.24□□□□□ -1.25
SCFD1-220ENST00000556486 TGFBR1P36897 503 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 RPL5P46777 297 aaKnown RBP7.24□□□□□ -1.25
SCFD1-220ENST00000556486 TFPI2P48307 235 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 TSPAN5P62079 268 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 BSXQ3C1V8 233 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 AARDQ4LEZ3 155 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 ZNF767PQ75MW2 155 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 LHFPL1Q86WI0 220 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 GRAMD2BQ96HH9 432 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 TMEM231Q9H6L2 316 aa7.24□□□□□ -1.25
SCFD1-220ENST00000556486 PUS1Q9Y606 427 aaKnown RBP eCLIP7.24□□□□□ -1.25
SCFD1-220ENST00000556486 IGKV3-7A0A075B6H7 116 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 IGLV2-18A0A075B6J9 118 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 IGHV3OR16-13A0A075B7E8 117 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 IGHV3-74A0A0B4J1X5 117 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 A0A1B0GU03 582 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 ZNF705EA8MWA4 302 aaPredicted RBP7.23□□□□□ -1.25
SCFD1-220ENST00000556486 ST8SIA3O43173 380 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 TMEM50AO95807 157 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 IGKV1-5P01602 117 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 IGHV3-48P01763 117 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 SPP1P10451 314 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 TBPP20226 339 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 CRYBB3P26998 211 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 SNCAP37840 140 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 DEFB131AP59861 70 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 Q6ZTC4 211 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 TRPT1Q86TN4 253 aaKnown RBP7.23□□□□□ -1.25
SCFD1-220ENST00000556486 GBGT1Q8N5D6 347 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms