RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 TEX50A0A1B0GTY4 177 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 J3KRW8 73 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 S100A7P31151 101 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 TMEM200BQ69YZ2 307 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 PRNTQ86SH4 94 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 ZNF295-AS1Q8N0V1 137 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 CPAMD8Q8IZJ3 1885 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 NPIPB11E5RHQ5 1161 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 C15orf65H3BRN8 121 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 APCSP02743 223 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 TMUB1Q9BVT8 246 aa12.16□□□□□ -0.46
CUX1-215ENST00000556210 RPUSD1Q9UJJ7 312 aaKnown RBP12.16□□□□□ -0.46
CUX1-215ENST00000556210 KIAA1549Q9HCM3 1950 aa12.15□□□□□ -0.46
CUX1-215ENST00000556210 MBD3L4A6NDZ8 208 aaPredicted RBP12.15□□□□□ -0.46
CUX1-215ENST00000556210 MBD3L3A6NE82 208 aaPredicted RBP12.15□□□□□ -0.46
CUX1-215ENST00000556210 MBD3L5A6NJ08 208 aaPredicted RBP12.15□□□□□ -0.46
CUX1-215ENST00000556210 SRRM4A7MD48 611 aaKnown RBP12.15□□□□□ -0.46
CUX1-215ENST00000556210 UPK2O00526 184 aa12.15□□□□□ -0.46
CUX1-215ENST00000556210 SEM1Q6ZVN7 128 aa12.15□□□□□ -0.46
CUX1-215ENST00000556210 MBD3L2Q8NHZ7 208 aaPredicted RBP12.15□□□□□ -0.46
CUX1-215ENST00000556210 GAFA1Q96PS6 74 aa12.15□□□□□ -0.46
CUX1-215ENST00000556210 RASL11BQ9BPW5 248 aa12.15□□□□□ -0.46
CUX1-215ENST00000556210 CD99P14209 185 aa12.15□□□□□ -0.46
CUX1-215ENST00000556210 ADIPOQQ15848 244 aa12.15□□□□□ -0.46
CUX1-215ENST00000556210 KLF17Q5JT82 389 aaPredicted RBP12.15□□□□□ -0.46
CUX1-215ENST00000556210 SSBP4Q9BWG4 385 aaPredicted RBP12.15□□□□□ -0.46
CUX1-215ENST00000556210 DYSFO75923 2080 aa12.15□□□□□ -0.46
CUX1-215ENST00000556210 RBFOX2O43251 390 aaKnown RBP eCLIP12.15□□□□□ -0.476e-7■■■□□ 18.3
CUX1-215ENST00000556210 WNT2P09544 360 aa12.15□□□□□ -0.47
CUX1-215ENST00000556210 COL8A1P27658 744 aa12.15□□□□□ -0.47
CUX1-215ENST00000556210 FOXL1Q12952 345 aa12.15□□□□□ -0.47
CUX1-215ENST00000556210 RNF2Q99496 336 aa12.15□□□□□ -0.47
CUX1-215ENST00000556210 DLL1O00548 723 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 NPSP0C0P6 89 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 SLC25A33Q9BSK2 321 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 ZNF430Q9H8G1 570 aaPredicted RBP12.14□□□□□ -0.47
CUX1-215ENST00000556210 UBTD1Q9HAC8 227 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 NRN1Q9NPD7 142 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 RNF24Q9Y225 148 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 GNG7O60262 68 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 PROP1O75360 226 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 Q6ZS92 163 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 RNASE6Q93091 150 aaKnown RBP12.14□□□□□ -0.47
CUX1-215ENST00000556210 PYGO2Q9BRQ0 406 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 IGHV3-49A0A0A0MS15 119 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 NUPR1O60356 82 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 MT-ND6P03923 174 aa12.14□□□□□ -0.47
CUX1-215ENST00000556210 CGB1A6NKQ9 187 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 CDKN1AP38936 164 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 BRWD1-AS2P59051 145 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 C17orf58Q2M2W7 97 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 SPACA3Q8IXA5 215 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 C1orf174Q8IYL3 243 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 HYPMO75409 117 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 CT45A10P0DMU9 189 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 COA6Q5JTJ3 125 aaKnown RBP12.13□□□□□ -0.47
CUX1-215ENST00000556210 LINC00312Q9Y6C7 94 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 STAG3L2P0CL84 134 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 STAG3L3P0CL85 134 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 ECSCRQ19T08 205 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 OR8B3Q8NGG8 313 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 OR8B2Q96RD0 313 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 SPOCK3Q9BQ16 436 aa12.13□□□□□ -0.47
CUX1-215ENST00000556210 PGLYRP4Q96LB8 373 aa12.12□□□□□ -0.47
CUX1-215ENST00000556210 SELENOKQ9Y6D0 94 aa12.12□□□□□ -0.47
CUX1-215ENST00000556210 TMEM144Q7Z5S9 345 aa12.12□□□□□ -0.47
CUX1-215ENST00000556210 RAB1CQ92928 201 aa12.12□□□□□ -0.47
CUX1-215ENST00000556210 TPSG1Q9NRR2 321 aa12.12□□□□□ -0.47
CUX1-215ENST00000556210 HIF1ANQ9NWT6 349 aa12.12□□□□□ -0.47
CUX1-215ENST00000556210 RAXQ9Y2V3 346 aa12.12□□□□□ -0.47
CUX1-215ENST00000556210 P01737 135 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 TYMSP04818 313 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 CNTFRP26992 372 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 FCGR2BP31994 310 aaPredicted RBP12.11□□□□□ -0.47
CUX1-215ENST00000556210 COX19Q49B96 90 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 Q8TCH9 128 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 DIRC2Q96SL1 478 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 TNRC6AQ8NDV7 1962 aaKnown RBP12.11□□□□□ -0.47
CUX1-215ENST00000556210 HLA-DQA1P01909 254 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 LOXL3P58215 753 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 ZNF596Q8TC21 504 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 NEU1Q99519 415 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 RAB1BQ9H0U4 201 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 WNK1Q9H4A3 2382 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 NPPCP23582 126 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 TDRG1Q3Y452 100 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 ZNF788Q6ZQV5 615 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 GOLT1AQ6ZVE7 132 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 Q6ZWC4 215 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 ERASQ7Z444 233 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 ZNF738Q8NE65 137 aa12.11□□□□□ -0.47
CUX1-215ENST00000556210 SONP18583 2426 aaKnown RBP12.11□□□□□ -0.47
CUX1-215ENST00000556210 USP9XQ93008 2570 aaPredicted RBP12.11□□□□□ -0.47
CUX1-215ENST00000556210 IGLV1-44P01699 117 aa12.1□□□□□ -0.47
CUX1-215ENST00000556210 PERPQ96FX8 193 aa12.1□□□□□ -0.47
CUX1-215ENST00000556210 IGHV3-66A0A0C4DH42 116 aa12.1□□□□□ -0.47
CUX1-215ENST00000556210 AREGP15514 252 aa12.1□□□□□ -0.47
CUX1-215ENST00000556210 ST6GALNAC3Q8NDV1 305 aa12.1□□□□□ -0.47
CUX1-215ENST00000556210 OSR1Q8TAX0 266 aaPredicted RBP12.1□□□□□ -0.47
CUX1-215ENST00000556210 PPOXP50336 477 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms