RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 GCSHP23434 173 aa9.9□□□□□ -0.82
VPS29-209ENST00000551655 RORCP51449 518 aa9.9□□□□□ -0.82
VPS29-209ENST00000551655 AP2S1P53680 142 aaPredicted RBP9.9□□□□□ -0.82
VPS29-209ENST00000551655 PSG9Q00887 426 aa9.9□□□□□ -0.82
VPS29-209ENST00000551655 ARL6IP1Q15041 203 aa9.9□□□□□ -0.82
VPS29-209ENST00000551655 FAM78BQ5VT40 261 aa9.9□□□□□ -0.82
VPS29-209ENST00000551655 SIGLEC15Q6ZMC9 328 aa9.9□□□□□ -0.82
VPS29-209ENST00000551655 KRTAP4-6Q9BYQ5 205 aa9.9□□□□□ -0.82
VPS29-209ENST00000551655 PLCXD1Q9NUJ7 323 aa9.9□□□□□ -0.82
VPS29-209ENST00000551655 A0A087WTM6 91 aa9.89□□□□□ -0.83
VPS29-209ENST00000551655 A0A0J9YY99 117 aa9.89□□□□□ -0.83
VPS29-209ENST00000551655 AZU1P20160 251 aa9.89□□□□□ -0.83
VPS29-209ENST00000551655 ERHP84090 104 aaKnown RBP9.89□□□□□ -0.83
VPS29-209ENST00000551655 ZNF79Q15937 498 aa9.89□□□□□ -0.83
VPS29-209ENST00000551655 IZUMO4Q1ZYL8 232 aa9.89□□□□□ -0.83
VPS29-209ENST00000551655 FOXI2Q6ZQN5 318 aa9.89□□□□□ -0.83
VPS29-209ENST00000551655 TSPAN14Q8NG11 270 aa9.89□□□□□ -0.83
VPS29-209ENST00000551655 OR4C16Q8NGL9 310 aa9.89□□□□□ -0.83
VPS29-209ENST00000551655 SEPSECSQ9HD40 501 aaKnown RBP9.89□□□□□ -0.83
VPS29-209ENST00000551655 MRPS16Q9Y3D3 137 aaKnown RBP9.89□□□□□ -0.83
VPS29-209ENST00000551655 TRAV26-1A0A087WT03 109 aa9.88□□□□□ -0.83
VPS29-209ENST00000551655 PTGES3LE9PB15 166 aa9.88□□□□□ -0.83
VPS29-209ENST00000551655 HOXA1P49639 335 aaPredicted RBP9.88□□□□□ -0.83
VPS29-209ENST00000551655 RNASE12Q5GAN4 147 aaKnown RBP9.88□□□□□ -0.83
VPS29-209ENST00000551655 OR4A16Q8NH70 328 aa9.88□□□□□ -0.83
VPS29-209ENST00000551655 TSC22D3Q99576 134 aa9.88□□□□□ -0.83
VPS29-209ENST00000551655 ERICH4A6NGS2 130 aa9.87□□□□□ -0.83
VPS29-209ENST00000551655 CBY3A6NI87 242 aa9.87□□□□□ -0.83
VPS29-209ENST00000551655 EBAG9O00559 213 aa9.87□□□□□ -0.83
VPS29-209ENST00000551655 RNASE2P10153 161 aaKnown RBP9.87□□□□□ -0.83
VPS29-209ENST00000551655 OPRK1P41145 380 aa9.87□□□□□ -0.83
VPS29-209ENST00000551655 HSPE1P61604 102 aaKnown RBP9.87□□□□□ -0.83
VPS29-209ENST00000551655 LINC01559Q495D7 138 aa9.87□□□□□ -0.83
VPS29-209ENST00000551655 CADM3Q8N126 398 aa9.87□□□□□ -0.83
VPS29-209ENST00000551655 OR4X1Q8NH49 305 aa9.87□□□□□ -0.83
VPS29-209ENST00000551655 GNPNAT1Q96EK6 184 aaPredicted RBP9.87□□□□□ -0.83
VPS29-209ENST00000551655 CLUHP3Q96NS8 147 aa9.87□□□□□ -0.83
VPS29-209ENST00000551655 S100A14Q9HCY8 104 aa9.87□□□□□ -0.83
VPS29-209ENST00000551655 LRP2P98164 4655 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 BUB3O43684 328 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 IGKV1-39P01597 117 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 IGKV1D-39P04432 117 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 ELK1P19419 428 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 SNCAP37840 140 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 RANBP1P43487 201 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 HERV-K104P61576 105 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 DHODHQ02127 395 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 OR5I1Q13606 314 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 HOGA1Q86XE5 327 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 C8orf59Q8N0T1 100 aaPredicted RBP9.86□□□□□ -0.83
VPS29-209ENST00000551655 DHRSXQ8N5I4 330 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 SEC22AQ96IW7 307 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 IGF2BP2-AS1Q96M15 143 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 SCPEP1Q9HB40 452 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 FAM30AQ9NZY2 134 aa9.86□□□□□ -0.83
VPS29-209ENST00000551655 M0R2Z0 102 aa9.85□□□□□ -0.83
VPS29-209ENST00000551655 PDCD5O14737 125 aa9.85□□□□□ -0.83
VPS29-209ENST00000551655 CASQ2O14958 399 aaPredicted RBP9.85□□□□□ -0.83
VPS29-209ENST00000551655 IL4P05112 153 aa9.85□□□□□ -0.83
VPS29-209ENST00000551655 TRAM1Q15629 374 aa9.85□□□□□ -0.83
VPS29-209ENST00000551655 AMTNQ6UX39 209 aa9.85□□□□□ -0.83
VPS29-209ENST00000551655 H2BFWTQ7Z2G1 175 aa9.85□□□□□ -0.83
VPS29-209ENST00000551655 COQ8AQ8NI60 647 aa9.85□□□□□ -0.83
VPS29-209ENST00000551655 RXFP4Q8TDU9 374 aa9.85□□□□□ -0.83
VPS29-209ENST00000551655 GPR146Q96CH1 333 aa9.85□□□□□ -0.83
VPS29-209ENST00000551655 CCDC90BQ9GZT6 254 aa9.85□□□□□ -0.83
VPS29-209ENST00000551655 A0A0J9YX75 114 aa9.84□□□□□ -0.83
VPS29-209ENST00000551655 MEIS3P1A6NDR6 274 aa9.84□□□□□ -0.83
VPS29-209ENST00000551655 SOCS3O14543 225 aa9.84□□□□□ -0.83
VPS29-209ENST00000551655 IGLC1P0CG04 106 aa9.84□□□□□ -0.83
VPS29-209ENST00000551655 RAB3BP20337 219 aa9.84□□□□□ -0.83
VPS29-209ENST00000551655 SMCPP49901 116 aaPredicted RBP9.84□□□□□ -0.83
VPS29-209ENST00000551655 PAX9P55771 341 aa9.84□□□□□ -0.83
VPS29-209ENST00000551655 DEFB104AQ8WTQ1 72 aa9.84□□□□□ -0.83
VPS29-209ENST00000551655 MRGPRFQ96AM1 343 aa9.84□□□□□ -0.83
VPS29-209ENST00000551655 FXYD6Q9H0Q3 95 aa9.84□□□□□ -0.83
VPS29-209ENST00000551655 CRXO43186 299 aaPredicted RBP9.83□□□□□ -0.84
VPS29-209ENST00000551655 HOXA5P20719 270 aa9.83□□□□□ -0.84
VPS29-209ENST00000551655 PSMA1P25786 263 aaKnown RBP9.83□□□□□ -0.84
VPS29-209ENST00000551655 SPINK13Q1W4C9 94 aa9.83□□□□□ -0.84
VPS29-209ENST00000551655 PHLDA2Q53GA4 152 aa9.83□□□□□ -0.84
VPS29-209ENST00000551655 BAP18Q8IXM2 172 aa9.83□□□□□ -0.84
VPS29-209ENST00000551655 SLC35G3Q8N808 338 aa9.83□□□□□ -0.84
VPS29-209ENST00000551655 Q8WTZ3 238 aa9.83□□□□□ -0.84
VPS29-209ENST00000551655 C20orf173Q96LM9 149 aa9.83□□□□□ -0.84
VPS29-209ENST00000551655 TMEM70Q9BUB7 260 aa9.83□□□□□ -0.84
VPS29-209ENST00000551655 TRAV1-2A0A0B4J238 106 aa9.82□□□□□ -0.84
VPS29-209ENST00000551655 CORTO00230 105 aa9.82□□□□□ -0.84
VPS29-209ENST00000551655 PLA2G1BP04054 148 aaKnown RBP9.82□□□□□ -0.84
VPS29-209ENST00000551655 P0C879 139 aa9.82□□□□□ -0.84
VPS29-209ENST00000551655 PSMB3P49720 205 aa9.82□□□□□ -0.84
VPS29-209ENST00000551655 RND2P52198 227 aa9.82□□□□□ -0.84
VPS29-209ENST00000551655 EBLN2Q6P2I7 272 aa9.82□□□□□ -0.84
VPS29-209ENST00000551655 LINC00528Q8N1L1 170 aa9.82□□□□□ -0.84
VPS29-209ENST00000551655 OR5AP2Q8NGF4 316 aa9.82□□□□□ -0.84
VPS29-209ENST00000551655 RNF125Q96EQ8 232 aa9.82□□□□□ -0.84
VPS29-209ENST00000551655 ABHD1Q96SE0 405 aa9.82□□□□□ -0.84
VPS29-209ENST00000551655 ZNF2Q9BSG1 426 aaPredicted RBP9.82□□□□□ -0.84
VPS29-209ENST00000551655 ACOT13Q9NPJ3 140 aa9.82□□□□□ -0.84
VPS29-209ENST00000551655 EHFQ9NZC4 300 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms