RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 PPP5CP53041 499 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 SNRPD3P62318 126 aaKnown RBP5.66□□□□□ -1.5
CD44-232ENST00000531118 MSMO1Q15800 293 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 RRN3P1Q2M238 152 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 GDF5OSQ5U4N7 250 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 PRSS48Q7RTY5 328 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 C1orf158Q8N1D5 194 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 ZNF114Q8NC26 417 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 OR10R2Q8NGX6 335 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 SECTM1Q8WVN6 248 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 PINX1Q96BK5 328 aaKnown RBP5.66□□□□□ -1.5
CD44-232ENST00000531118 FAM3DQ96BQ1 224 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 MOB3AQ96BX8 217 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 NARS2Q96I59 477 aaKnown RBP5.66□□□□□ -1.5
CD44-232ENST00000531118 CNBD2Q96M20 576 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 C7orf50Q9BRJ6 194 aaKnown RBP5.66□□□□□ -1.5
CD44-232ENST00000531118 DUSP21Q9H596 190 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 FNDC4Q9H6D8 234 aaPredicted RBP5.66□□□□□ -1.5
CD44-232ENST00000531118 CCL28Q9NRJ3 127 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 NSG2Q9Y328 171 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 GOLT1BQ9Y3E0 138 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 OR51B2Q9Y5P1 312 aa5.66□□□□□ -1.5
CD44-232ENST00000531118 LYRM9A8MSI8 78 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 IGKV3-20P01619 116 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 CTXN2P0C2S0 81 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 GCSHP23434 173 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 NPBWR1P48145 328 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 EIF2B2P49770 351 aaKnown RBP5.65□□□□□ -1.5
CD44-232ENST00000531118 DEFB1P60022 68 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 ERVK-16P61578 105 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 MLLT11Q13015 90 aaPredicted RBP5.65□□□□□ -1.5
CD44-232ENST00000531118 OR51H1Q8NH63 302 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 DEFB104AQ8WTQ1 72 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 GLMPQ8WWB7 406 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 TMEM56Q96MV1 263 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 TMEM70Q9BUB7 260 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 PLEKHA2Q9HB19 425 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 ACOT13Q9NPJ3 140 aa5.65□□□□□ -1.5
CD44-232ENST00000531118 ELF5Q9UKW6 265 aaPredicted RBP5.65□□□□□ -1.5
CD44-232ENST00000531118 LSM2Q9Y333 95 aaKnown RBP5.65□□□□□ -1.5
CD44-232ENST00000531118 MRPS16Q9Y3D3 137 aaKnown RBP5.65□□□□□ -1.5
CD44-232ENST00000531118 AK6Q9Y3D8 172 aaKnown RBP5.65□□□□□ -1.5
CD44-232ENST00000531118 KRTAP23-1A1A580 65 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 ATP5G1P05496 136 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 DEFB130BP0DP73 79 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 DEFB130AP0DP74 79 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 NKX2-1P43699 371 aaPredicted RBP5.64□□□□□ -1.51
CD44-232ENST00000531118 ATP5G3P48201 142 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 TBCEQ15813 527 aaPredicted RBP5.64□□□□□ -1.51
CD44-232ENST00000531118 RNASE12Q5GAN4 147 aaKnown RBP5.64□□□□□ -1.51
CD44-232ENST00000531118 AADACL3Q5VUY0 350 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 CNIH2Q6PI25 160 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 OR4C16Q8NGL9 310 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 OR13F1Q8NGS4 319 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 TMEM203Q969S6 136 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 UHRF2Q96PU4 802 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 MGLLQ99685 303 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 SLC35B3Q9H1N7 401 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 SEPSECSQ9HD40 501 aaKnown RBP5.64□□□□□ -1.51
CD44-232ENST00000531118 NRN1Q9NPD7 142 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 RAB22AQ9UL26 194 aa5.64□□□□□ -1.51
CD44-232ENST00000531118 A0A087WTM6 91 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 B5MCH6 92 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 PDCD5O14737 125 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 HOXA1P49639 335 aaPredicted RBP5.63□□□□□ -1.51
CD44-232ENST00000531118 GABARAPL2P60520 117 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 C2orf76Q3KRA6 126 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 HES5Q5TA89 166 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 C16orf54Q6UWD8 224 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 FOXI2Q6ZQN5 318 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 ZBTB34Q8NCN2 500 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 NUDCD2Q8WVJ2 157 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 FCGR1BQ92637 280 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 SAV1Q9H4B6 383 aaPredicted RBP5.63□□□□□ -1.51
CD44-232ENST00000531118 PRNDQ9UKY0 176 aa5.63□□□□□ -1.51
CD44-232ENST00000531118 HNRNPCP07910 306 aaKnown RBP eCLIP5.62□□□□□ -1.51
CD44-232ENST00000531118 MYL9P24844 172 aa5.62□□□□□ -1.51
CD44-232ENST00000531118 CALRP27797 417 aaKnown RBP5.62□□□□□ -1.51
CD44-232ENST00000531118 RORCP51449 518 aa5.62□□□□□ -1.51
CD44-232ENST00000531118 ZNF79Q15937 498 aa5.62□□□□□ -1.51
CD44-232ENST00000531118 ZNF818PQ6ZRF7 136 aa5.62□□□□□ -1.51
CD44-232ENST00000531118 MAGT1Q9H0U3 335 aa5.62□□□□□ -1.51
CD44-232ENST00000531118 ANXA10Q9UJ72 324 aa5.62□□□□□ -1.51
CD44-232ENST00000531118 PLAC8L1A1L4L8 177 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 SNAPC5O75971 98 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 TMEM50AO95807 157 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 OXTP01178 125 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 PPYP01298 95 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 FCGR2CP31995 323 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 G6PCP35575 357 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 AP2S1P53680 142 aaPredicted RBP5.61□□□□□ -1.51
CD44-232ENST00000531118 FXYD4P59646 89 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 ARPC4P59998 168 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 RPS25P62851 125 aaKnown RBP5.61□□□□□ -1.51
CD44-232ENST00000531118 PRCDQ00LT1 54 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 FABP5Q01469 135 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 ESRGQ1W209 222 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 SIGLEC15Q6ZMC9 328 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 TMEM91Q6ZNR0 172 aa5.61□□□□□ -1.51
CD44-232ENST00000531118 TPRA1Q86W33 373 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms