RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 NPIPB3Q92617 1050 aa13.73□□□□□ -0.21
NPHP4-210ENST00000506941 ACY3Q96HD9 319 aa13.73□□□□□ -0.21
NPHP4-210ENST00000506941 SMIM8Q96KF7 97 aa13.73□□□□□ -0.21
NPHP4-210ENST00000506941 C2orf50Q96LR7 162 aa13.73□□□□□ -0.21
NPHP4-210ENST00000506941 YIF1AO95070 293 aa13.72□□□□□ -0.21
NPHP4-210ENST00000506941 OR10J1P30954 320 aa13.72□□□□□ -0.21
NPHP4-210ENST00000506941 GPX4P36969 197 aaPredicted RBP13.72□□□□□ -0.21
NPHP4-210ENST00000506941 GAMTQ14353 236 aa13.72□□□□□ -0.21
NPHP4-210ENST00000506941 BTNL8Q6UX41 500 aa13.72□□□□□ -0.21
NPHP4-210ENST00000506941 GSG1LQ6UXU4 331 aa13.72□□□□□ -0.21
NPHP4-210ENST00000506941 MARC2Q969Z3 335 aa13.72□□□□□ -0.21
NPHP4-210ENST00000506941 TECRQ9NZ01 308 aaKnown RBP13.72□□□□□ -0.21
NPHP4-210ENST00000506941 PSENENQ9NZ42 101 aa13.72□□□□□ -0.21
NPHP4-210ENST00000506941 MRPL27Q9P0M9 148 aaKnown RBP13.72□□□□□ -0.21
NPHP4-210ENST00000506941 STRAPQ9Y3F4 350 aaKnown RBP13.72□□□□□ -0.21
NPHP4-210ENST00000506941 PUS1Q9Y606 427 aaKnown RBP eCLIP13.72□□□□□ -0.21
NPHP4-210ENST00000506941 K7EMT4 169 aa13.71□□□□□ -0.21
NPHP4-210ENST00000506941 K7EPK0 472 aa13.71□□□□□ -0.21
NPHP4-210ENST00000506941 RPP30P78346 268 aaKnown RBP13.71□□□□□ -0.21
NPHP4-210ENST00000506941 IL15RAQ13261 267 aa13.71□□□□□ -0.21
NPHP4-210ENST00000506941 LCN12Q6JVE5 192 aa13.71□□□□□ -0.21
NPHP4-210ENST00000506941 OR1S2Q8NGQ3 325 aa13.71□□□□□ -0.21
NPHP4-210ENST00000506941 OR2K2Q8NGT1 345 aa13.71□□□□□ -0.21
NPHP4-210ENST00000506941 RAB40CQ96S21 281 aa13.71□□□□□ -0.21
NPHP4-210ENST00000506941 LSM4Q9Y4Z0 139 aaKnown RBP13.71□□□□□ -0.21
NPHP4-210ENST00000506941 TRAV30A0A087WSZ9 112 aa13.7□□□□□ -0.22
NPHP4-210ENST00000506941 C7orf66A4D0T2 115 aa13.7□□□□□ -0.22
NPHP4-210ENST00000506941 GOSR2O14653 212 aa13.7□□□□□ -0.22
NPHP4-210ENST00000506941 CCNKO75909 580 aa13.7□□□□□ -0.22
NPHP4-210ENST00000506941 SIX6O95475 246 aa13.7□□□□□ -0.22
NPHP4-210ENST00000506941 TMEM61Q8N0U2 210 aa13.7□□□□□ -0.22
NPHP4-210ENST00000506941 WDR89Q96FK6 387 aaPredicted RBP13.7□□□□□ -0.22
NPHP4-210ENST00000506941 C11orf1Q9H5F2 150 aa13.7□□□□□ -0.22
NPHP4-210ENST00000506941 LSM5Q9Y4Y9 91 aaKnown RBP13.7□□□□□ -0.22
NPHP4-210ENST00000506941 IGKV1D-37A0A075B6S9 117 aa13.69□□□□□ -0.22
NPHP4-210ENST00000506941 IGHV3-49A0A0A0MS15 119 aa13.69□□□□□ -0.22
NPHP4-210ENST00000506941 ZNF785A8K8V0 405 aa13.69□□□□□ -0.22
NPHP4-210ENST00000506941 PMS2P5A8MQ11 134 aa13.69□□□□□ -0.22
NPHP4-210ENST00000506941 SCAF4O95104 1147 aaKnown RBP13.69□□□□□ -0.22
NPHP4-210ENST00000506941 TMEM14EPQ6UXP3 125 aa13.69□□□□□ -0.22
NPHP4-210ENST00000506941 SLC35E1Q96K37 410 aa13.69□□□□□ -0.22
NPHP4-210ENST00000506941 IGKV1OR2-108A0A075B7D4 117 aa13.68□□□□□ -0.22
NPHP4-210ENST00000506941 IGHV7-4-1A0A0J9YVY3 117 aa13.68□□□□□ -0.22
NPHP4-210ENST00000506941 TSC22D2O75157 780 aa13.68□□□□□ -0.22
NPHP4-210ENST00000506941 SCGB2A1O75556 95 aa13.68□□□□□ -0.22
NPHP4-210ENST00000506941 TAS2R30P59541 319 aa13.68□□□□□ -0.22
NPHP4-210ENST00000506941 YPEL3P61236 119 aaPredicted RBP13.68□□□□□ -0.22
NPHP4-210ENST00000506941 SMPXQ9UHP9 88 aa13.68□□□□□ -0.22
NPHP4-210ENST00000506941 IGHV3OR16-13A0A075B7E8 117 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 TRAV14DV4A0A0A6YYC5 116 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 IGHV3-74A0A0B4J1X5 117 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 APOHP02749 345 aaPredicted RBP13.67□□□□□ -0.22
NPHP4-210ENST00000506941 METTL15P1P0C7V9 234 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 H2BFSP57053 126 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 S100A10P60903 97 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 DCTN2Q13561 401 aaKnown RBP13.67□□□□□ -0.22
NPHP4-210ENST00000506941 RAB32Q13637 225 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 DEFB121Q5J5C9 76 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 OR8G2PQ6IF36 304 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 ACOT7LQ6ZUV0 252 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 Q8N1Y9 231 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 GINS3Q9BRX5 216 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 ALG5Q9Y673 324 aa13.67□□□□□ -0.22
NPHP4-210ENST00000506941 CHEK1O14757 476 aa13.66□□□□□ -0.22
NPHP4-210ENST00000506941 SSNA1O43805 119 aa13.66□□□□□ -0.22
NPHP4-210ENST00000506941 TOMM40O96008 361 aa13.66□□□□□ -0.22
NPHP4-210ENST00000506941 ZNF90Q03938 601 aa13.66□□□□□ -0.22
NPHP4-210ENST00000506941 GUCA2BQ16661 112 aa13.66□□□□□ -0.22
NPHP4-210ENST00000506941 THAP8Q8NA92 274 aa13.66□□□□□ -0.22
NPHP4-210ENST00000506941 RHPN1-AS1Q9BWJ2 59 aa13.66□□□□□ -0.22
NPHP4-210ENST00000506941 ZFP92A6NM28 416 aa13.65□□□□□ -0.22
NPHP4-210ENST00000506941 PSG1P11464 419 aa13.65□□□□□ -0.22
NPHP4-210ENST00000506941 ARL16Q0P5N6 197 aa13.65□□□□□ -0.22
NPHP4-210ENST00000506941 Q8WTZ3 238 aa13.65□□□□□ -0.22
NPHP4-210ENST00000506941 ST8SIA2Q92186 375 aa13.65□□□□□ -0.22
NPHP4-210ENST00000506941 RNF2Q99496 336 aa13.65□□□□□ -0.22
NPHP4-210ENST00000506941 NMES1Q9C002 83 aa13.65□□□□□ -0.22
NPHP4-210ENST00000506941 L7N2F9 121 aa13.64□□□□□ -0.23
NPHP4-210ENST00000506941 RD3LP0DJH9 198 aa13.64□□□□□ -0.23
NPHP4-210ENST00000506941 VAMP2P63027 116 aa13.64□□□□□ -0.23
NPHP4-210ENST00000506941 USF2Q15853 346 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-210ENST00000506941 LILRB2Q8N423 598 aa13.64□□□□□ -0.23
NPHP4-210ENST00000506941 VSIRQ9H7M9 311 aa13.64□□□□□ -0.23
NPHP4-210ENST00000506941 MGAT4CQ9UBM8 478 aa13.64□□□□□ -0.23
NPHP4-210ENST00000506941 TRAV25A0A0B4J276 109 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 IGHV3-66A0A0C4DH42 116 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 IL4P05112 153 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 CD7P09564 240 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 NPPCP23582 126 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 CRYBB3P26998 211 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 RRAS2P62070 204 aaPredicted RBP13.63□□□□□ -0.23
NPHP4-210ENST00000506941 DLK1P80370 383 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 AKR1C1Q04828 323 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 RGS21Q2M5E4 152 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 RBPMS2Q6ZRY4 209 aaKnown RBP13.63□□□□□ -0.23
NPHP4-210ENST00000506941 METTL26Q96S19 204 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 TRGV9Q99603 122 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 SMAD5-AS1Q9Y6J3 95 aa13.63□□□□□ -0.23
NPHP4-210ENST00000506941 FAM24AA6NFZ4 105 aa13.62□□□□□ -0.23
NPHP4-210ENST00000506941 TSPAN4O14817 238 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms