RNA–Protein interactions for RNA: ENST00000493795.5

BRCA1-221, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 5,732 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-221ENST00000493795 LHBP01229 141 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 RPL35AP18077 110 aaKnown RBP6.52□□□□□ -1.37
BRCA1-221ENST00000493795 TIMP3P35625 211 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 TCF15Q12870 199 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 ATRAIDQ6UW56 229 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 TMEM158Q8WZ71 300 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 C1QTNF5Q9BXJ0 243 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 ZNF138P52744 262 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 LINC00477Q96M19 166 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 SH2D1AO60880 128 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 CRLF1O75462 422 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 LINC00271P0C7V0 271 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 C9orf139Q6ZV77 190 aa6.52□□□□□ -1.37
BRCA1-221ENST00000493795 CCL3L1P16619 93 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 MAST2Q6P0Q8 1798 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 CHD4Q14839 1912 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 TRBV24-1A0A075B6N3 115 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 SRRM4A7MD48 611 aaKnown RBP6.51□□□□□ -1.37
BRCA1-221ENST00000493795 IL18BPO95998 194 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 CDKN1AP38936 164 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 MORN2Q502X0 79 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 ATP1A1-AS1Q5TC04 95 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 SLC22A18ASQ8N1D0 253 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 RGPD5Q99666 1765 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 DOT1LQ8TEK3 1739 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 IGKV1-8A0A0C4DH67 115 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 hADV29S1A0JD25 119 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 SYS1-DBNDD2H3BUS1 97 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 EREGO14944 169 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 ITGBL1O95965 494 aaPredicted RBP6.51□□□□□ -1.37
BRCA1-221ENST00000493795 SMRP1Q8NCR6 262 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 PPDPFLQ8WWR9 84 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 MBNL3Q9NUK0 354 aaKnown RBP6.51□□□□□ -1.37
BRCA1-221ENST00000493795 THBDP07204 575 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 SRSF3P84103 164 aaKnown RBP6.51□□□□□ -1.37
BRCA1-221ENST00000493795 THAP8Q8NA92 274 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 DEFB104AQ8WTQ1 72 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 NABP1Q96AH0 204 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 GAGE12JA6NER3 117 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 FXYD7P58549 80 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 GAGE1Q13065 139 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 GAGE4Q13068 117 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 GAGE5Q13069 117 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 GAGE6Q13070 117 aa6.51□□□□□ -1.37
BRCA1-221ENST00000493795 CTSBP07858 339 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 MPZP25189 248 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 SPSB3Q6PJ21 355 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 C11orf44Q8N8P7 122 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 MRPL27Q9P0M9 148 aaKnown RBP6.5□□□□□ -1.37
BRCA1-221ENST00000493795 TIMM23O14925 209 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 EGR2P11161 476 aaPredicted RBP6.5□□□□□ -1.37
BRCA1-221ENST00000493795 RPL15P61313 204 aaKnown RBP6.5□□□□□ -1.37
BRCA1-221ENST00000493795 ZC2HC1BQ5TFG8 222 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 GREM1O60565 184 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 CD55P08174 381 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 PSG7Q13046 419 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 ZNF497Q6ZNH5 498 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 TRPT1Q86TN4 253 aaKnown RBP6.5□□□□□ -1.37
BRCA1-221ENST00000493795 IGHG4P01861 327 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 NBL1P41271 181 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 DSCR9P59020 149 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 TAL2Q16559 108 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 C14orf178Q8N769 122 aaPredicted RBP6.5□□□□□ -1.37
BRCA1-221ENST00000493795 RNF166Q96A37 237 aaPredicted RBP6.5□□□□□ -1.37
BRCA1-221ENST00000493795 SMIM2Q9BVW6 85 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 WDR83OSQ9Y284 106 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 SELENOKQ9Y6D0 94 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 SHROOM3Q8TF72 1996 aa6.5□□□□□ -1.37
BRCA1-221ENST00000493795 PMS2P5A8MQ11 134 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 C5orf67F2Z3F1 127 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 F8VVB4 439 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 F8VWA3 439 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 RAMP3O60896 148 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 SAP25Q8TEE9 199 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 TMEM141Q96I45 108 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 RNF126Q9BV68 326 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 C1QCP02747 245 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 C3orf79P0CE67 100 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 CD24P25063 80 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 KLF5Q13887 457 aaPredicted RBP6.49□□□□□ -1.37
BRCA1-221ENST00000493795 SRSF7Q16629 238 aaKnown RBP eCLIP6.49□□□□□ -1.37
BRCA1-221ENST00000493795 RNASE6Q93091 150 aaKnown RBP6.49□□□□□ -1.37
BRCA1-221ENST00000493795 SLC25A28Q96A46 364 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 SCRT2Q9NQ03 307 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 ZNF319Q9P2F9 582 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 SDK1Q7Z5N4 2213 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 KDM3BQ7LBC6 1761 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 TRBV7-1A0A0A6YYK4 115 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 CGB3P0DN86 165 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 IGHV1-2P23083 117 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 TOPAZ1Q8N9V7 1692 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 DDX60Q8IY21 1712 aaKnown RBP6.49□□□□□ -1.37
BRCA1-221ENST00000493795 CXCL1P09341 107 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 C15orf32Q32M92 178 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 PPP1R32Q7Z5V6 425 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 EXOC3-AS1Q8N2X6 119 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 TRAV40A0A0B4J280 105 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 A0A1B0GTI1 187 aa6.49□□□□□ -1.37
BRCA1-221ENST00000493795 SUPT4H1P63272 117 aaKnown RBP6.49□□□□□ -1.37
BRCA1-221ENST00000493795 LCNL1Q6ZST4 164 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms