RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 H3BMG7 143 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 PSPHP1O15172 72 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 TRACP01848 142 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 CD3DP04234 171 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 LINC00869P0C866 280 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 POLR2IP36954 125 aaKnown RBP3.24□□□□□ -1.89
BRCA1-220ENST00000492859 TAS2R45P59539 299 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 HOXA4Q00056 320 aaPredicted RBP3.24□□□□□ -1.89
BRCA1-220ENST00000492859 SPATA45Q537H7 98 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 FAM57BQ71RH2 274 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 DRAM1Q8N682 238 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 OR5C1Q8NGR4 320 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 SCGB1C1Q8TD33 95 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 RAB37Q96AX2 223 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 LYZL4Q96KX0 146 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 AMELYQ99218 206 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 CCL13Q99616 98 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 NDUFB11Q9NX14 153 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 KLK5Q9Y337 293 aaPredicted RBP3.24□□□□□ -1.89
BRCA1-220ENST00000492859 LAMC3Q9Y6N6 1575 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 SHANK3Q9BYB0 1731 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 HMGXB3Q12766 1538 aa3.24□□□□□ -1.89
BRCA1-220ENST00000492859 DOCK1Q14185 1865 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 TRAV9-1A0A075B6T8 112 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 IGHV6-1A0A0B4J1U7 121 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 IGKV1D-43A0A0B4J1Z2 117 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 SNCGO76070 127 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 SFTA3P0C7M3 94 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 FRMD6-AS1P0C7T7 363 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 SLC25A4P12235 298 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 TPT1P13693 172 aaKnown RBP3.23□□□□□ -1.89
BRCA1-220ENST00000492859 CA7P43166 264 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 NCBP2P52298 156 aaKnown RBP eCLIP3.23□□□□□ -1.895e-10■■■■■ 33.9
BRCA1-220ENST00000492859 RPS21P63220 83 aaKnown RBP3.23□□□□□ -1.89
BRCA1-220ENST00000492859 LGALS9BQ3B8N2 356 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 FBXL19-AS1Q494R0 122 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 WDR38Q5JTN6 314 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 UBE2NLQ5JXB2 153 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 CLLU1OSQ5K130 101 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 MORN5Q5VZ52 161 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 TEN1Q86WV5 123 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 OR2T35Q8NGX2 323 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 OR10AG1Q8NH19 301 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 RBMXL1Q96E39 390 aaKnown RBP3.23□□□□□ -1.89
BRCA1-220ENST00000492859 SPCS1Q9Y6A9 102 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 MCM3APO60318 1980 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 ABCC6O95255 1503 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 CDC42BPBQ9Y5S2 1711 aa3.23□□□□□ -1.89
BRCA1-220ENST00000492859 IQGAP2Q13576 1575 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 ROBO1Q9Y6N7 1651 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 ADAMTS20P59510 1910 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 TRBV20OR9-2A0A075B6H5 130 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 IGKV1-27A0A075B6S5 117 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 RBAKDNA6NC62 111 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 NDUFC2-KCTD14E9PQ53 114 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 H3BT86 120 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 COX7A2LO14548 114 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 UBE2L6O14933 153 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 PLA2G10O15496 165 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 SYNGR2O43760 224 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 CST7O76096 145 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 CXCL1P09341 107 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 HLA-DRB4P13762 266 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 FCGR2CP31995 323 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 ASIPP42127 132 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 DAPP51397 102 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 ZNF80P51504 273 aaPredicted RBP3.22□□□□□ -1.89
BRCA1-220ENST00000492859 ZC2HC1BQ5TFG8 222 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 C11orf71Q6IPW1 123 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 C11orf87Q6NUJ2 197 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 Q6ZRM9 215 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 LINC00173Q6ZV60 143 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 LCA10Q71F78 164 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 METTL27Q8N6F8 245 aaPredicted RBP3.22□□□□□ -1.89
BRCA1-220ENST00000492859 SMRP1Q8NCR6 262 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 OR10P1Q8NGE3 313 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 STAG3L4Q8TBR4 150 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 VOPP1Q96AW1 172 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 TOMM6Q96B49 74 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 C2orf50Q96LR7 162 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 PRELID3AQ96N28 172 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 CKLFQ9UBR5 152 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 SERP1Q9Y6X1 66 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 HLA-DRB4X5D2U9 266 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 ZMYM4Q5VZL5 1548 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 KDM3BQ7LBC6 1761 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 COL24A1Q17RW2 1714 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 LRRC9Q6ZRR7 1453 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 PATJQ8NI35 1801 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 POLEQ07864 2286 aa3.22□□□□□ -1.89
BRCA1-220ENST00000492859 IGHV1-69DA0A0B4J2H0 117 aa3.21□□□□□ -1.89
BRCA1-220ENST00000492859 A0A1W2PPM0 123 aa3.21□□□□□ -1.89
BRCA1-220ENST00000492859 ZNF860A6NHJ4 632 aa3.21□□□□□ -1.89
BRCA1-220ENST00000492859 IGLL5B9A064 214 aa3.21□□□□□ -1.89
BRCA1-220ENST00000492859 PROSCO94903 275 aa3.21□□□□□ -1.89
BRCA1-220ENST00000492859 GYPAP02724 150 aa3.21□□□□□ -1.89
BRCA1-220ENST00000492859 RBP4P02753 201 aa3.21□□□□□ -1.89
BRCA1-220ENST00000492859 LGALS3P17931 250 aaKnown RBP3.21□□□□□ -1.89
BRCA1-220ENST00000492859 CXCL5P42830 114 aa3.21□□□□□ -1.89
BRCA1-220ENST00000492859 CRYBA2P53672 197 aa3.21□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms