RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 RAB40CQ96S21 281 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 SPATA25Q9BR10 227 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 PEMTQ9UBM1 199 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 RCL1Q9Y2P8 373 aaKnown RBP9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 NUPL2O15504 423 aaKnown RBP9□□□□□ -0.97
SQSTM1-206ENST00000466342 MBPP02686 304 aaPredicted RBP9□□□□□ -0.97
SQSTM1-206ENST00000466342 IFNA4P05014 189 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 CTSGP08311 255 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 SLC25A4P12235 298 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 ADMP35318 185 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 RAB11AP62491 216 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 MLANAQ16655 118 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 FAM106AQ4KMX7 169 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 SPANXN5Q5MJ07 72 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 OR4X1Q8NH49 305 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 SMIM8Q96KF7 97 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 CHRDL1Q9BU40 450 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 ZNF436Q9C0F3 470 aaPredicted RBP9□□□□□ -0.97
SQSTM1-206ENST00000466342 SIGLEC8Q9NYZ4 499 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 PSENENQ9NZ42 101 aa9□□□□□ -0.97
SQSTM1-206ENST00000466342 MRPL36Q9P0J6 103 aaKnown RBP9□□□□□ -0.97
SQSTM1-206ENST00000466342 IGHV3-35A0A0C4DH35 117 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 A8MWP6 167 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 A8MZ25 164 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 H3BP45 60 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 K7EPK0 472 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 NDUFA4O00483 81 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 SSNA1O43805 119 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 CLN5O75503 358 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 TMEM50AO95807 157 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 LY6G6CO95867 125 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 CSN3P07498 182 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 PAX9P55771 341 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 TAS2R30P59541 319 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 RELQ04864 619 aaPredicted RBP8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 IL15RAQ13261 267 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 PRSS54Q6PEW0 395 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 IL34Q6ZMJ4 242 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 SLC16A13Q7RTY0 426 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 TMEM116Q8NCL8 245 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 PAIP2BQ9ULR5 123 aaKnown RBP8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 STRAPQ9Y3F4 350 aaKnown RBP8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 ALG5Q9Y673 324 aa8.99□□□□□ -0.97
SQSTM1-206ENST00000466342 MUC4Q99102 2169 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 ZNF320A2RRD8 509 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 TSC22D2O75157 780 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 SCGB2A1O75556 95 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 SIX6O95475 246 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 IGHV4-30-4P0DP06 118 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 GPX4P36969 197 aaPredicted RBP8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 RND2P52198 227 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 OXA1LQ15070 435 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 UNQ9165/PRO28630Q6UXU0 137 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 CACNG8Q8WXS5 425 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 TMEM190Q8WZ59 177 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 ZNF414Q96IQ9 312 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 NMES1Q9C002 83 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 C19orf73Q9NVV2 129 aa8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 LSM5Q9Y4Y9 91 aaKnown RBP8.98□□□□□ -0.97
SQSTM1-206ENST00000466342 TRAV30A0A087WSZ9 112 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 TMEM213A2RRL7 107 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 C2orf70A6NJV1 201 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 PRSS46E5RG02 174 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 L7N2F9 121 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 ELLP55199 621 aaPredicted RBP8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 H2BFSP57053 126 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 S100A10P60903 97 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 VAMP2P63027 116 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 CYCSP99999 105 aaKnown RBP8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 RAB32Q13637 225 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 TMEM14EPQ6UXP3 125 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 ZNF600Q6ZNG1 722 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 Q8N1Y9 231 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 ACY3Q96HD9 319 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 SLC35E1Q96K37 410 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 C11orf1Q9H5F2 150 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 MGAT4CQ9UBM8 478 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 UFC1Q9Y3C8 167 aa8.97□□□□□ -0.97
SQSTM1-206ENST00000466342 PMS2P5A8MQ11 134 aa8.96□□□□□ -0.98
SQSTM1-206ENST00000466342 IGKV1-17P01599 117 aa8.96□□□□□ -0.98
SQSTM1-206ENST00000466342 IGLC1P0CG04 106 aa8.96□□□□□ -0.98
SQSTM1-206ENST00000466342 PVALBP20472 110 aaPredicted RBP8.96□□□□□ -0.98
SQSTM1-206ENST00000466342 GAMTQ14353 236 aa8.96□□□□□ -0.98
SQSTM1-206ENST00000466342 OR1S2Q8NGQ3 325 aa8.96□□□□□ -0.98
SQSTM1-206ENST00000466342 NPIPB3Q92617 1050 aa8.96□□□□□ -0.98
SQSTM1-206ENST00000466342 DAZ1Q9NQZ3 744 aaKnown RBP8.96□□□□□ -0.98
SQSTM1-206ENST00000466342 METTL15P1P0C7V9 234 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 FOLR2P14207 255 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 EDN2P20800 178 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 CBLN1P23435 193 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 OR10J1P30954 320 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 HAGHQ16775 308 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 TIGITQ495A1 244 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 TM4SF20Q53R12 229 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 LCN12Q6JVE5 192 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 HAPLN4Q86UW8 402 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 OR10P1Q8NGE3 313 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 OR2K2Q8NGT1 345 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 MARC2Q969Z3 335 aa8.95□□□□□ -0.98
SQSTM1-206ENST00000466342 C20orf24Q9BUV8 137 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms