RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 UBE2SQ16763 222 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 VMA21Q3ZAQ7 101 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF705AQ6ZN79 300 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 LCA10Q71F78 164 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 GPHB5Q86YW7 130 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 OR8D4Q8NGM9 314 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 SLC25A46Q96AG3 418 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 IMMP1LQ96LU5 166 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 EIF2AK4Q9P2K8 1649 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 ATP7BP35670 1465 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 RAI1Q7Z5J4 1906 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 TRAV38-1A0A0B4J264 116 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 A0A1B0GVX0 72 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 TRDV1A0A1B0GX56 115 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 C9JCJ5 164 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 SLC25A20O43772 301 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 CST7O76096 145 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 TLX1NBP0CAT3 122 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 KDELR1P24390 212 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 PLCXD2Q0VAA5 305 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 TAF9Q16594 264 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 KTN1-AS1Q86SY8 53 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 OR4C16Q8NGL9 310 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 OSTCQ9NRP0 149 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 PARP4Q9UKK3 1724 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 LRRC37A3O60309 1634 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 LTBP1Q14766 1721 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 IGHV3OR15-7A0A075B7D8 119 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 A0A096LPI6 279 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 TLCD2A6NGC4 264 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 F6UZH7 168 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 OVOL1O14753 267 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF73O43830 326 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 GGCTO75223 188 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF286BP0CG31 522 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 SMIM6P0DI80 62 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 TMBIM6P55061 237 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 LOXL1Q08397 574 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 SYCNQ0VAF6 134 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 LINC00303Q3SY05 128 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 LGALSLQ3ZCW2 172 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 RNASE10Q5GAN6 216 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 SPANXN3Q5MJ09 141 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 UNQ9165/PRO28630Q6UXU0 137 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 KRTAP5-2Q701N4 177 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 MAGOHBQ96A72 148 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 GGACTQ9BVM4 153 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 OR8D2Q9GZM6 311 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 RPP21Q9H633 154 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF355PQ9NSJ1 428 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 NAT8BQ9UHF3 227 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 TRBV6-6A0A0A6YYG2 114 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 IGHV3-43A0A0B4J1X8 118 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 IGKV1-12A0A0C4DH73 117 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 ODAMA1E959 279 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 SRRM5B3KS81 715 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 CREBL2O60519 120 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 FSTL3O95633 263 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 IGKV1D-12P01611 117 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 FXYD7P58549 80 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 C9orf129Q5T035 196 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 PRSS54Q6PEW0 395 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 OR51T1Q8NGJ9 327 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 YPEL2Q96QA6 119 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 GPX7Q96SL4 187 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 PRADC1Q9BSG0 188 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 DERL1Q9BUN8 251 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 AICDAQ9GZX7 198 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 TUBA4BQ9H853 241 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 MARCOQ9UEW3 520 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF580Q9UK33 172 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 ICOSQ9Y6W8 199 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 CDC42BPGQ6DT37 1551 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 TRIP11Q15643 1979 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 TET2Q6N021 2002 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 A0A0B4J2C4 111 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 C20orf202A1L168 122 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 FABP5P3A8MUU1 101 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 SH2D1AO60880 128 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF324O75467 553 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 SNAPC5O75971 98 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 HTR1AP08908 422 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 RPS10P46783 165 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 RAB5CP51148 216 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 ELF3P78545 371 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 RRN3P1Q2M238 152 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 C1orf140Q5VVS0 124 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 OR4K15Q8NH41 348 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 SLAMF6Q96DU3 332 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 PRO3102Q9H379 93 aa1.63□□□□□ -2.15
CCDC88A-208ENST00000444458 NOTCH4Q99466 2003 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 GCC2Q8IWJ2 1684 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 PEAK1Q9H792 1746 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 A0A087X0T9 212 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 GRIFINA4D1Z8 144 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 A8MWP6 167 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 TRGV3P03979 118 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 S100A8P05109 93 aa1.62□□□□□ -2.15
CCDC88A-208ENST00000444458 FGF12P61328 243 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms