RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 C22orf46C9J442 243 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 CRYGBP07316 175 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 FRMD6-AS1P0C7T7 363 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 PPIAL4GP0DN37 164 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 MGST1P10620 155 aaKnown RBP17.47■□□□□ 0.39
SHMT1-202ENST00000352886 COX7A1P24310 79 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 ETFRF1Q6IPR1 90 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 LINC00305Q7Z4B0 112 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 NEU1Q99519 415 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 SIGLEC9Q9Y336 463 aa17.47■□□□□ 0.39
SHMT1-202ENST00000352886 LRBAP50851 2863 aa17.46■□□□□ 0.39
SHMT1-202ENST00000352886 IER3P46695 156 aa17.46■□□□□ 0.39
SHMT1-202ENST00000352886 OSTCQ9NRP0 149 aa17.46■□□□□ 0.39
SHMT1-202ENST00000352886 TNFRSF19Q9NS68 423 aa17.46■□□□□ 0.39
SHMT1-202ENST00000352886 ANKHD1Q8IWZ3 2542 aaKnown RBP17.46■□□□□ 0.39
SHMT1-202ENST00000352886 SPTA1P02549 2419 aa17.46■□□□□ 0.39
SHMT1-202ENST00000352886 ABCA4P78363 2273 aa17.46■□□□□ 0.38
SHMT1-202ENST00000352886 CCL21O00585 134 aa17.46■□□□□ 0.38
SHMT1-202ENST00000352886 NUPR1O60356 82 aa17.46■□□□□ 0.38
SHMT1-202ENST00000352886 FSTL3O95633 263 aa17.46■□□□□ 0.38
SHMT1-202ENST00000352886 FBXL19-AS1Q494R0 122 aa17.46■□□□□ 0.38
SHMT1-202ENST00000352886 LINC00479Q96M42 142 aa17.46■□□□□ 0.38
SHMT1-202ENST00000352886 ZNF705GA8MUZ8 300 aaPredicted RBP17.45■□□□□ 0.38
SHMT1-202ENST00000352886 ISLRO14498 428 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 CRYGCP07315 174 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 ZNF672Q499Z4 452 aaPredicted RBP17.45■□□□□ 0.38
SHMT1-202ENST00000352886 BEND2Q8NDZ0 799 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 TMEM68Q96MH6 324 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 AMMECR1Q9Y4X0 333 aaPredicted RBP17.45■□□□□ 0.38
SHMT1-202ENST00000352886 ZZEF1O43149 2961 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 FCN1O00602 326 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 SNRPCP09234 159 aaKnown RBP17.45■□□□□ 0.38
SHMT1-202ENST00000352886 PAX1P15863 534 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 ORM2P19652 201 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 COMPP49747 757 aaPredicted RBP17.45■□□□□ 0.38
SHMT1-202ENST00000352886 IBA57Q5T440 356 aaKnown RBP17.45■□□□□ 0.38
SHMT1-202ENST00000352886 PVRIGQ6DKI7 326 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 NHLRC2Q8NBF2 726 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 FXYD5Q96DB9 178 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 CDC42EP3Q9UKI2 254 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 MSRB2Q9Y3D2 182 aa17.45■□□□□ 0.38
SHMT1-202ENST00000352886 IGHV3-21A0A0B4J1V1 117 aa17.44■□□□□ 0.38
SHMT1-202ENST00000352886 SNURFLB1AK76 121 aa17.44■□□□□ 0.38
SHMT1-202ENST00000352886 LBHQ53QV2 105 aaPredicted RBP17.44■□□□□ 0.38
SHMT1-202ENST00000352886 PPP1R27Q86WC6 154 aa17.44■□□□□ 0.38
SHMT1-202ENST00000352886 RPEQ96AT9 228 aa17.44■□□□□ 0.38
SHMT1-202ENST00000352886 TCAPO15273 167 aa17.43■□□□□ 0.38
SHMT1-202ENST00000352886 SPINK4O60575 86 aa17.43■□□□□ 0.38
SHMT1-202ENST00000352886 ZNF329Q86UD4 541 aa17.43■□□□□ 0.38
SHMT1-202ENST00000352886 OR1B1Q8NGR6 318 aa17.43■□□□□ 0.38
SHMT1-202ENST00000352886 TACC2O95359 2948 aa17.43■□□□□ 0.38
SHMT1-202ENST00000352886 ST6GALNAC3Q8NDV1 305 aa17.43■□□□□ 0.38
SHMT1-202ENST00000352886 C22orf15Q8WYQ4 148 aa17.43■□□□□ 0.38
SHMT1-202ENST00000352886 DCHS2Q6V1P9 2916 aa17.43■□□□□ 0.38
SHMT1-202ENST00000352886 TCL1AP56279 114 aa17.42■□□□□ 0.38
SHMT1-202ENST00000352886 CX3CL1P78423 397 aa17.42■□□□□ 0.38
SHMT1-202ENST00000352886 CDSNQ15517 529 aa17.42■□□□□ 0.38
SHMT1-202ENST00000352886 FBXL15Q9H469 300 aa17.42■□□□□ 0.38
SHMT1-202ENST00000352886 SERTAD4Q9NUC0 356 aa17.42■□□□□ 0.38
SHMT1-202ENST00000352886 TP53TG3Q9ULZ0 132 aa17.42■□□□□ 0.38
SHMT1-202ENST00000352886 PEX7O00628 323 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 RBP4P02753 201 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 CRISP2P16562 243 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 SLC35B1P78383 322 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 LHFPL4Q7Z7J7 247 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 TMEM116Q8NCL8 245 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 OR8B3Q8NGG8 313 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 PERPQ96FX8 193 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 OR8B2Q96RD0 313 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 TRGV9Q99603 122 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 ONECUT1Q9UBC0 465 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 LY6HO94772 140 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 RAB4BP61018 213 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 CMTM2Q8TAZ6 248 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 GNB1LQ9BYB4 327 aa17.41■□□□□ 0.38
SHMT1-202ENST00000352886 TRBV9A0A0B4J1U6 114 aa17.4■□□□□ 0.38
SHMT1-202ENST00000352886 TEX22C9J3V5 150 aa17.4■□□□□ 0.38
SHMT1-202ENST00000352886 ZNF664Q8N3J9 261 aa17.4■□□□□ 0.38
SHMT1-202ENST00000352886 C8orf46Q8TAG6 207 aa17.4■□□□□ 0.38
SHMT1-202ENST00000352886 RAXQ9Y2V3 346 aa17.4■□□□□ 0.38
SHMT1-202ENST00000352886 TRAV34A0A0B4J273 112 aa17.4■□□□□ 0.38
SHMT1-202ENST00000352886 CORTO00230 105 aa17.4■□□□□ 0.38
SHMT1-202ENST00000352886 RANP62826 216 aaKnown RBP17.4■□□□□ 0.38
SHMT1-202ENST00000352886 RPL19P84098 196 aaKnown RBP17.4■□□□□ 0.38
SHMT1-202ENST00000352886 ASPHD1Q5U4P2 390 aa17.4■□□□□ 0.38
SHMT1-202ENST00000352886 F11RQ9Y624 299 aaKnown RBP17.4■□□□□ 0.38
SHMT1-202ENST00000352886 ARHGAP32A7KAX9 2087 aa17.39■□□□□ 0.38
SHMT1-202ENST00000352886 BLNKQ8WV28 456 aa17.39■□□□□ 0.37
SHMT1-202ENST00000352886 CA1P00915 261 aaPredicted RBP17.39■□□□□ 0.37
SHMT1-202ENST00000352886 USF2Q15853 346 aaPredicted RBP17.39■□□□□ 0.37
SHMT1-202ENST00000352886 STXBP6Q8NFX7 210 aa17.39■□□□□ 0.37
SHMT1-202ENST00000352886 GSX1Q9H4S2 264 aaPredicted RBP17.39■□□□□ 0.37
SHMT1-202ENST00000352886 NAT8BQ9UHF3 227 aa17.39■□□□□ 0.37
SHMT1-202ENST00000352886 ABCA1O95477 2261 aa17.38■□□□□ 0.37
SHMT1-202ENST00000352886 SMIM27A0A1W2PRY6 76 aa17.38■□□□□ 0.37
SHMT1-202ENST00000352886 GNG5P63218 68 aa17.38■□□□□ 0.37
SHMT1-202ENST00000352886 IQCJQ1A5X6 159 aa17.38■□□□□ 0.37
SHMT1-202ENST00000352886 BAGE2Q86Y30 109 aa17.38■□□□□ 0.37
SHMT1-202ENST00000352886 SRSF12Q8WXF0 261 aaKnown RBP17.38■□□□□ 0.37
SHMT1-202ENST00000352886 IGF2RP11717 2491 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms