RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 BET1LQ9NYM9 111 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 G3V318 75 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 ARPC5O15511 151 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 LINC01006Q8NI28 216 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 IGFBP2P18065 325 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 Q6ZSV7 163 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 FUNDC1Q8IVP5 155 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 OR8A1Q8NGG7 326 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 NXF2Q9GZY0 626 aaKnown RBP6.78□□□□□ -1.32
HMGB1-203ENST00000341423 OTOFQ9HC10 1997 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 C7orf66A4D0T2 115 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 FBLL1A6NHQ2 334 aaKnown RBP6.78□□□□□ -1.32
HMGB1-203ENST00000341423 TMEM14DPA8MWL7 114 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 H3BMM0 161 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 UBE2WQ96B02 151 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 FAM110AQ9BQ89 295 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 ZSWIM8A7E2V4 1837 aa6.78□□□□□ -1.32
HMGB1-203ENST00000341423 GATA2P23769 480 aaPredicted RBP6.77□□□□□ -1.32
HMGB1-203ENST00000341423 TAS2R60P59551 318 aa6.77□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF493Q6ZR52 646 aa6.77□□□□□ -1.32
HMGB1-203ENST00000341423 ZC2HC1AQ96GY0 325 aa6.77□□□□□ -1.32
HMGB1-203ENST00000341423 PARP12Q9H0J9 701 aaKnown RBP6.77□□□□□ -1.32
HMGB1-203ENST00000341423 SOCS1O15524 211 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 FGF8P55075 233 aaPredicted RBP6.77□□□□□ -1.33
HMGB1-203ENST00000341423 PSG3Q16557 428 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 SLC25A48Q6ZT89 311 aaKnown RBP6.77□□□□□ -1.33
HMGB1-203ENST00000341423 VKORC1L1Q8N0U8 176 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 LRTM2Q8N967 370 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 OR2T35Q8NGX2 323 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 SPRY4Q9C004 299 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 BTF3P20290 206 aaKnown RBP6.77□□□□□ -1.33
HMGB1-203ENST00000341423 C1orf134Q5TEV5 83 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 BAGE3Q86Y29 109 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 BAGE2Q86Y30 109 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 SUN5Q8TC36 379 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 IGLV3-9A0A075B6K5 115 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 A0A0G2JK05 382 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 SNRPCP09234 159 aaKnown RBP6.77□□□□□ -1.33
HMGB1-203ENST00000341423 IER3P46695 156 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 MYOZ3Q8TDC0 251 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 GTSF1Q8WW33 167 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 PSORS1C1Q9UIG5 152 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 TNFSF18Q9UNG2 199 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 RLFQ13129 1914 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 TMEM89A2RUT3 159 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 HOXB4P17483 251 aaPredicted RBP6.77□□□□□ -1.33
HMGB1-203ENST00000341423 NDPQ00604 133 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 SURF2Q15527 256 aaPredicted RBP6.77□□□□□ -1.33
HMGB1-203ENST00000341423 TXNL4BQ9NX01 149 aaKnown RBP6.77□□□□□ -1.33
HMGB1-203ENST00000341423 KAAG1Q9UBP8 84 aa6.77□□□□□ -1.33
HMGB1-203ENST00000341423 A0A0B4J2A0 478 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 SRRM4A7MD48 611 aaKnown RBP6.76□□□□□ -1.33
HMGB1-203ENST00000341423 LOXP28300 417 aaPredicted RBP6.76□□□□□ -1.33
HMGB1-203ENST00000341423 CD83Q01151 205 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 PPP1R1AQ13522 171 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 OR10G4Q8NGN3 311 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 OR10G9Q8NGN4 311 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 OR10G7Q8NGN6 311 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 ZNF503Q96F45 646 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 SLIRPQ9GZT3 109 aaKnown RBP6.76□□□□□ -1.33
HMGB1-203ENST00000341423 SHPKQ9UHJ6 478 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 CCDC88CQ9P219 2028 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 UPK2O00526 184 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 CD37P11049 281 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 SCAND1P57086 179 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 RNF182Q8N6D2 247 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 TRAV8-1A0A0A6YYK1 113 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 FAM24AA6NFZ4 105 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 M0R3E3 92 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 ATP5LO75964 103 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 HLA-DRB1P01911 266 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 ETV1P50549 477 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 POLR2GP62487 172 aaKnown RBP eCLIP6.76□□□□□ -1.33
HMGB1-203ENST00000341423 BLCAPP62952 87 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 VAMP3Q15836 100 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 MYPOPQ86VE0 399 aaPredicted RBP6.76□□□□□ -1.33
HMGB1-203ENST00000341423 DSCAMO60469 2012 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 TRAV1-2A0A0B4J238 106 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 F6UB75 175 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 HLA-DMBP28068 263 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 ICAM4Q14773 271 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 MORN2Q502X0 79 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 OR5A1Q8NGJ0 315 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 IFI27L2Q9H2X8 130 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 FGF20Q9NP95 211 aaPredicted RBP6.76□□□□□ -1.33
HMGB1-203ENST00000341423 ACANP16112 2415 aa6.76□□□□□ -1.33
HMGB1-203ENST00000341423 TRAV1-1A0A0B4J248 108 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 RHODO00212 210 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 ZNF295-AS1Q8N0V1 137 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 TMEM272A0A1B0GTI8 110 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 DUXBA0A1W2PPF3 345 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 IGLV1-44P01699 117 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 FAM71F2Q6NXP2 309 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 C1QCP02747 245 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 AZU1P20160 251 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 CNTFRP26992 372 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 PQLC2Q6ZP29 291 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 ZNF502Q8TBZ5 544 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 VN1R17PQ8TDU5 208 aa6.75□□□□□ -1.33
HMGB1-203ENST00000341423 CACNG8Q8WXS5 425 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms