RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 DOPEY1Q5JWR5 2465 aa9.16□□□□□ -0.94
CUX1-202ENST00000292538 C8orf88P0DMB2 117 aa9.16□□□□□ -0.94
CUX1-202ENST00000292538 PRTN3P24158 256 aa9.16□□□□□ -0.94
CUX1-202ENST00000292538 GPX4P36969 197 aaPredicted RBP9.16□□□□□ -0.94
CUX1-202ENST00000292538 ZNF503Q96F45 646 aa9.16□□□□□ -0.94
CUX1-202ENST00000292538 EAF1Q96JC9 268 aaPredicted RBP9.16□□□□□ -0.94
CUX1-202ENST00000292538 CSPG4Q6UVK1 2322 aa9.16□□□□□ -0.94
CUX1-202ENST00000292538 SLC17A3O00476 420 aa9.16□□□□□ -0.94
CUX1-202ENST00000292538 NBR2O15453 112 aa9.16□□□□□ -0.94
CUX1-202ENST00000292538 RNF224P0DH78 156 aa9.16□□□□□ -0.94
CUX1-202ENST00000292538 FOLR2P14207 255 aa9.16□□□□□ -0.94
CUX1-202ENST00000292538 YPEL4Q96NS1 127 aa9.16□□□□□ -0.94
CUX1-202ENST00000292538 IGHV3-35A0A0C4DH35 117 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 MDFIC2A0A1B0GVS7 189 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 TCRBV4S1A1TA0A5B7 111 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 A1L4Q6 167 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 MRPL41Q8IXM3 137 aaKnown RBP9.15□□□□□ -0.94
CUX1-202ENST00000292538 C8orf46Q8TAG6 207 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 ABCA12Q86UK0 2595 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 IGKV1D-37A0A075B6S9 117 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 IGHV3OR16-8A0A075B7F1 116 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 TRAV34A0A0B4J273 112 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 CXorf65A6NEN9 183 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 LY6LH3BQJ8 138 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 ANKRD39Q53RE8 183 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 PATE2Q6UY27 113 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 PQLC2Q6ZP29 291 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 C12orf57Q99622 126 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 PAXXQ9BUH6 204 aa9.15□□□□□ -0.94
CUX1-202ENST00000292538 HELTA6NFD8 242 aa9.15□□□□□ -0.95
CUX1-202ENST00000292538 TEX22C9J3V5 150 aa9.15□□□□□ -0.95
CUX1-202ENST00000292538 PPP5D1E7EU14 171 aa9.15□□□□□ -0.95
CUX1-202ENST00000292538 SLC35B1P78383 322 aa9.15□□□□□ -0.95
CUX1-202ENST00000292538 MAJINQ3KP22 176 aa9.15□□□□□ -0.95
CUX1-202ENST00000292538 FAM120AOSQ5T036 256 aa9.15□□□□□ -0.95
CUX1-202ENST00000292538 GFI1BQ5VTD9 330 aa9.15□□□□□ -0.95
CUX1-202ENST00000292538 FRZBQ92765 325 aa9.15□□□□□ -0.95
CUX1-202ENST00000292538 SLC25A2Q9BXI2 301 aa9.15□□□□□ -0.95
CUX1-202ENST00000292538 SERTAD4Q9NUC0 356 aa9.15□□□□□ -0.95
CUX1-202ENST00000292538 DMRT1Q9Y5R6 373 aa9.15□□□□□ -0.95
CUX1-202ENST00000292538 GGTLC3B5MD39 225 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 ERVFC1-1P60608 527 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 PMS2P11Q13670 270 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 C1QL4Q86Z23 238 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 PERPQ96FX8 193 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 TMEM167BQ9NRX6 74 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 PTPN13Q12923 2485 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 ZNF320A2RRD8 509 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 C5orf52A6NGY3 159 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 M0R1W7 72 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 IGHV2-5P01817 119 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 CRYGBP07316 175 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 TRGC1P0CF51 173 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 TMEM11P17152 192 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 HOXB4P17483 251 aaPredicted RBP9.14□□□□□ -0.95
CUX1-202ENST00000292538 ATP5IP56385 69 aaPredicted RBP9.14□□□□□ -0.95
CUX1-202ENST00000292538 TIGITQ495A1 244 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 ETFRF1Q6IPR1 90 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 OR11H6Q8NGC7 330 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 OR1P1Q8NH06 330 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 SGMS2Q8NHU3 365 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 SFRP2Q96HF1 295 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 CCL19Q99731 98 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 CTDSP1Q9GZU7 261 aa9.14□□□□□ -0.95
CUX1-202ENST00000292538 F11RQ9Y624 299 aaKnown RBP9.14□□□□□ -0.95
CUX1-202ENST00000292538 AP4M1O00189 453 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 HIST1H2BKO60814 126 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 IGHV4-39P01824 125 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 HIST1H2BJP06899 126 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 HIST1H2BOP23527 126 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 HIST1H2BBP33778 126 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 GNG4P50150 75 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 HIST1H2BDP58876 126 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 HIST1H2BCP62807 126 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 GNG5P63218 68 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 HIST2H2BEQ16778 126 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 CENPWQ5EE01 88 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.13□□□□□ -0.95
CUX1-202ENST00000292538 PRR27Q6MZM9 219 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 HIST1H2BHQ93079 126 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 HIST1H2BNQ99877 126 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 HIST1H2BMQ99879 126 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 OR51M1Q9H341 326 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 FNDC10F2Z333 226 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 TCL1AP56279 114 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 CX3CL1P78423 397 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 LINC00518Q8N0U6 118 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 OR2T10Q8NGZ9 312 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 RASL11BQ9BPW5 248 aa9.13□□□□□ -0.95
CUX1-202ENST00000292538 PSG1P11464 419 aa9.12□□□□□ -0.95
CUX1-202ENST00000292538 BRD3OSQ6XYD6 125 aa9.12□□□□□ -0.95
CUX1-202ENST00000292538 OR1L4Q8NGR5 311 aa9.12□□□□□ -0.95
CUX1-202ENST00000292538 RNASE7Q9H1E1 156 aaKnown RBP9.12□□□□□ -0.95
CUX1-202ENST00000292538 K7EN84 100 aa9.12□□□□□ -0.95
CUX1-202ENST00000292538 HYPMO75409 117 aa9.12□□□□□ -0.95
CUX1-202ENST00000292538 PFN1P07737 140 aaKnown RBP9.12□□□□□ -0.95
CUX1-202ENST00000292538 SAA4P35542 130 aa9.12□□□□□ -0.95
CUX1-202ENST00000292538 ATP5J2P56134 94 aa9.12□□□□□ -0.95
CUX1-202ENST00000292538 ECSCRQ19T08 205 aa9.12□□□□□ -0.95
CUX1-202ENST00000292538 C5orf64Q2M2E5 130 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms