RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 LHBP01229 141 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 PSG5Q15238 335 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 TDRG1Q3Y452 100 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 FAM90A2PQ658T7 463 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 OR9G1Q8NH87 305 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 FOXA2Q9Y261 457 aaPredicted RBP13.37□□□□□ -0.27
CTCF-201ENST00000264010 ZNF134P52741 427 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 SPRNQ5BIV9 151 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 RNASE6Q93091 150 aaKnown RBP13.37□□□□□ -0.27
CTCF-201ENST00000264010 KCNS1Q96KK3 526 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 SGK494Q96LW2 274 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 MRPL20Q9BYC9 149 aaKnown RBP13.37□□□□□ -0.27
CTCF-201ENST00000264010 CA1P00915 261 aaPredicted RBP13.37□□□□□ -0.27
CTCF-201ENST00000264010 TREML4Q6UXN2 200 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 ZNF295-AS1Q8N0V1 137 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 RPEQ96AT9 228 aa13.37□□□□□ -0.27
CTCF-201ENST00000264010 GFRA3O60609 400 aa13.36□□□□□ -0.27
CTCF-201ENST00000264010 OR10W1Q8NGF6 305 aa13.36□□□□□ -0.27
CTCF-201ENST00000264010 VENTXO95231 258 aa13.36□□□□□ -0.27
CTCF-201ENST00000264010 COX7A1P24310 79 aa13.36□□□□□ -0.27
CTCF-201ENST00000264010 PMCHL1Q16048 86 aa13.36□□□□□ -0.27
CTCF-201ENST00000264010 VKORC1Q9BQB6 163 aa13.36□□□□□ -0.27
CTCF-201ENST00000264010 SPTAN1Q13813 2472 aaKnown RBP13.36□□□□□ -0.27
CTCF-201ENST00000264010 NBASA2RRP1 2371 aa13.36□□□□□ -0.27
CTCF-201ENST00000264010 DUX4L9Q6RFH8 374 aaPredicted RBP13.36□□□□□ -0.27
CTCF-201ENST00000264010 GATAD1Q8WUU5 269 aa13.36□□□□□ -0.27
CTCF-201ENST00000264010 RAB1BQ9H0U4 201 aa13.36□□□□□ -0.27
CTCF-201ENST00000264010 OR2T8A6NH00 312 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 TMEM178BH3BS89 294 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 DLL1O00548 723 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 FAM222BQ8WU58 562 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 MCRIP2Q9BUT9 160 aaKnown RBP13.35□□□□□ -0.27
CTCF-201ENST00000264010 TMEM242Q9NWH2 141 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 AMMECR1Q9Y4X0 333 aaPredicted RBP13.35□□□□□ -0.27
CTCF-201ENST00000264010 INSIG2Q9Y5U4 225 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 GCSAMLQ5JQS6 135 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 SLC25A48Q6ZT89 311 aaKnown RBP13.35□□□□□ -0.27
CTCF-201ENST00000264010 OR1L4Q8NGR5 311 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 SCRT1Q9BWW7 348 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 MAP1LC3CQ9BXW4 147 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 SPCS1Q9Y6A9 102 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 OR2J3O76001 311 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 CENPVQ7Z7K6 275 aaPredicted RBP13.35□□□□□ -0.27
CTCF-201ENST00000264010 TMEM116Q8NCL8 245 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 RAB1CQ92928 201 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 GGTLC1Q9BX51 225 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 ONECUT1Q9UBC0 465 aa13.35□□□□□ -0.27
CTCF-201ENST00000264010 LSM4Q9Y4Z0 139 aaKnown RBP13.35□□□□□ -0.27
CTCF-201ENST00000264010 OR4C46A6NHA9 309 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 SAA1P0DJI8 122 aaPredicted RBP13.34□□□□□ -0.27
CTCF-201ENST00000264010 GCHFRP30047 84 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 CKS1BP61024 79 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 PRCDQ00LT1 54 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 SRSF8Q9BRL6 282 aaKnown RBP13.34□□□□□ -0.27
CTCF-201ENST00000264010 TRBV24-1A0A075B6N3 115 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 LEPROTL1O95214 131 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 IGKV1D-33P01593 117 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 IGKV1-33P01594 117 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 TYMSP04818 313 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 LINC01560Q8TB33 94 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 ZC2HC1AQ96GY0 325 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 SIGMAR1Q99720 223 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 ZNF257Q9Y2Q1 563 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 MED13LQ71F56 2210 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 MUC6Q6W4X9 2439 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 P0C879 139 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 IGFBP2P18065 325 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 TNXAQ16473 311 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 PDPNQ86YL7 162 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 COX11Q9Y6N1 276 aa13.34□□□□□ -0.27
CTCF-201ENST00000264010 VDAC2P45880 294 aaPredicted RBP13.33□□□□□ -0.27
CTCF-201ENST00000264010 TEX36Q5VZQ5 186 aa13.33□□□□□ -0.27
CTCF-201ENST00000264010 NABP2Q9BQ15 211 aa13.33□□□□□ -0.27
CTCF-201ENST00000264010 MMD2Q8IY49 270 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 CITED1Q99966 193 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 SLC25A17O43808 307 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 ATP5G3P48201 142 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 CR1LQ2VPA4 569 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 PQLC2Q6ZP29 291 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 CHODLQ9H9P2 273 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 LOC389332A0A1B0GUA5 103 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 C7orf71A4D174 169 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 HELTA6NFD8 242 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 GPR6P46095 362 aaPredicted RBP13.33□□□□□ -0.28
CTCF-201ENST00000264010 TMEM200BQ69YZ2 307 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 TMEM144Q7Z5S9 345 aa13.33□□□□□ -0.28
CTCF-201ENST00000264010 IGHV3-72A0A0B4J1Y9 119 aa13.32□□□□□ -0.28
CTCF-201ENST00000264010 LOC107984156A0A0G2JMH3 177 aa13.32□□□□□ -0.28
CTCF-201ENST00000264010 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.32□□□□□ -0.28
CTCF-201ENST00000264010 CA7P43166 264 aa13.32□□□□□ -0.28
CTCF-201ENST00000264010 UBE2L3P68036 154 aaKnown RBP13.32□□□□□ -0.28
CTCF-201ENST00000264010 HES1Q14469 280 aa13.32□□□□□ -0.28
CTCF-201ENST00000264010 ARL17AQ8IVW1 177 aa13.32□□□□□ -0.28
CTCF-201ENST00000264010 SFRP2Q96HF1 295 aa13.32□□□□□ -0.28
CTCF-201ENST00000264010 MGST2Q99735 147 aa13.32□□□□□ -0.28
CTCF-201ENST00000264010 C19orf24Q9BVV8 132 aa13.32□□□□□ -0.28
CTCF-201ENST00000264010 CT45A6P0DMU7 189 aa13.32□□□□□ -0.28
CTCF-201ENST00000264010 CT45A5P0DMU8 189 aa13.32□□□□□ -0.28
CTCF-201ENST00000264010 CT45A7P0DMV0 189 aa13.32□□□□□ -0.28
CTCF-201ENST00000264010 LGALS7P47929 136 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms