RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 EAF1Q96JC9 268 aaPredicted RBP13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 SAV1Q9H4B6 383 aaPredicted RBP13.59□□□□□ -0.23
SHKBP1-216ENST00000598201 COLCA2A8K830 154 aa13.58□□□□□ -0.24
SHKBP1-216ENST00000598201 MOSP00540 346 aa13.58□□□□□ -0.24
SHKBP1-216ENST00000598201 LGALS4P56470 323 aa13.58□□□□□ -0.24
SHKBP1-216ENST00000598201 UBE2G2P60604 165 aa13.58□□□□□ -0.24
SHKBP1-216ENST00000598201 SPNS3Q6ZMD2 512 aa13.58□□□□□ -0.24
SHKBP1-216ENST00000598201 ZNF114Q8NC26 417 aa13.58□□□□□ -0.24
SHKBP1-216ENST00000598201 OR4F5Q8NH21 305 aa13.58□□□□□ -0.24
SHKBP1-216ENST00000598201 SRSF12Q8WXF0 261 aaKnown RBP13.58□□□□□ -0.24
SHKBP1-216ENST00000598201 NPIPB3Q92617 1050 aa13.58□□□□□ -0.24
SHKBP1-216ENST00000598201 OR4F4Q96R69 305 aa13.58□□□□□ -0.24
SHKBP1-216ENST00000598201 LPAR2Q9HBW0 351 aa13.58□□□□□ -0.24
SHKBP1-216ENST00000598201 NBR2O15453 112 aa13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 GATCO43716 136 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 FOXH1O75593 365 aa13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 RHOBP62745 196 aa13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 DMRT1Q9Y5R6 373 aa13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 VPS13CQ709C8 3753 aa13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 IGKV1D-37A0A075B6S9 117 aa13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 TAGLN2P37802 199 aaKnown RBP13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 HES1Q14469 280 aa13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 MIR17HGQ75NE6 70 aa13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 NPBQ8NG41 125 aa13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 MISP3Q96FF7 219 aa13.57□□□□□ -0.24
SHKBP1-216ENST00000598201 ZNF727A8MUV8 499 aa13.56□□□□□ -0.24
SHKBP1-216ENST00000598201 NDUFA3O95167 84 aa13.56□□□□□ -0.24
SHKBP1-216ENST00000598201 CXorf1O96002 111 aa13.56□□□□□ -0.24
SHKBP1-216ENST00000598201 MEOX2P50222 304 aa13.56□□□□□ -0.24
SHKBP1-216ENST00000598201 MINOS1Q5TGZ0 78 aa13.56□□□□□ -0.24
SHKBP1-216ENST00000598201 FAM78BQ5VT40 261 aa13.56□□□□□ -0.24
SHKBP1-216ENST00000598201 MRPL41Q8IXM3 137 aaKnown RBP13.56□□□□□ -0.24
SHKBP1-216ENST00000598201 AJUBAQ96IF1 538 aa13.56□□□□□ -0.24
SHKBP1-216ENST00000598201 MINOS1-NBL1R4GNA1 71 aa13.56□□□□□ -0.24
SHKBP1-216ENST00000598201 C11orf94C9JXX5 98 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 CRYGCP07315 174 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 ATP5G3P48201 142 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 RND2P52198 227 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 CYP2G1PQ6ZSU1 146 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 OR1P1Q8NH06 330 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 FAM168AQ92567 244 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 RPUSD4Q96CM3 377 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 SLC25A33Q9BSK2 321 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 IGHV3-21A0A0B4J1V1 117 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 IGHV4-61A0A0C4DH41 118 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 TMEM250H0YL14 139 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 NPPCP23582 126 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 GCHFRP30047 84 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 ZNF90Q03938 601 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 KIAA0141Q14154 515 aaPredicted RBP13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 ZNF674Q2M3X9 581 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 CCDC144NLQ6NUI1 221 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 TUBA4BQ9H853 241 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 SDF2L1Q9HCN8 221 aa13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 F11RQ9Y624 299 aaKnown RBP13.55□□□□□ -0.24
SHKBP1-216ENST00000598201 ABCA2Q9BZC7 2435 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 CNIH1O95406 144 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 UBE2E1P51965 193 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 CST9LP1Q5W188 147 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 THAP8Q8NA92 274 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 OR51G1Q8NGK1 321 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 OR2T10Q8NGZ9 312 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 C10orf105Q8TEF2 133 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 TMEM37Q8WXS4 190 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 SMIM7Q9BQ49 75 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 FUT9Q9Y231 359 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 CSMD1Q96PZ7 3565 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 PSMB11A5LHX3 300 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 OOSP1A8MZH6 123 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 DEFB113Q30KQ7 82 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 Q8N6K4 173 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 C15orf54Q8N8G6 183 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 HIST1H2BAQ96A08 127 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 PIMREGQ9BSJ6 248 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 PARLQ9H300 379 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 BEX4Q9NWD9 120 aaPredicted RBP13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 NAV2Q8IVL1 2488 aa13.54□□□□□ -0.24
SHKBP1-216ENST00000598201 ANKRD17O75179 2603 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-216ENST00000598201 OR5G3P0C626 314 aa13.53□□□□□ -0.24
SHKBP1-216ENST00000598201 PAX1P15863 534 aa13.53□□□□□ -0.24
SHKBP1-216ENST00000598201 ATP5J2P56134 94 aa13.53□□□□□ -0.24
SHKBP1-216ENST00000598201 C5orf64Q2M2E5 130 aa13.53□□□□□ -0.24
SHKBP1-216ENST00000598201 MBD6Q96DN6 1003 aa13.53□□□□□ -0.24
SHKBP1-216ENST00000598201 PERPQ96FX8 193 aa13.53□□□□□ -0.24
SHKBP1-216ENST00000598201 FAM103A1Q9BTL3 118 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-216ENST00000598201 YTHDF2Q9Y5A9 579 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-216ENST00000598201 PDZD2O15018 2839 aa13.53□□□□□ -0.24
SHKBP1-216ENST00000598201 TCRBV4S1A1TA0A5B7 111 aa13.52□□□□□ -0.24
SHKBP1-216ENST00000598201 VWC2LB2RUY7 222 aa13.52□□□□□ -0.24
SHKBP1-216ENST00000598201 MORN5Q5VZ52 161 aa13.52□□□□□ -0.24
SHKBP1-216ENST00000598201 ZNF503Q96F45 646 aa13.52□□□□□ -0.24
SHKBP1-216ENST00000598201 POLR3KQ9Y2Y1 108 aaPredicted RBP13.52□□□□□ -0.24
SHKBP1-216ENST00000598201 ABCA1O95477 2261 aa13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 A0A087WWC5 75 aa13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 NDUFS6O75380 124 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 OR2C1O95371 312 aa13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 MT-CO2P00403 227 aa13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 CRYBA1P05813 215 aa13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 SAA4P35542 130 aa13.52□□□□□ -0.25
SHKBP1-216ENST00000598201 EBI3Q14213 229 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms