RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 USMG5Q96IX5 58 aa11.97□□□□□ -0.49
SS18-215ENST00000580642 PSMG3Q9BT73 122 aaPredicted RBP11.97□□□□□ -0.49
SS18-215ENST00000580642 C16orf95Q9H693 158 aa11.97□□□□□ -0.49
SS18-215ENST00000580642 LSM4Q9Y4Z0 139 aaKnown RBP11.97□□□□□ -0.49
SS18-215ENST00000580642 SETXQ7Z333 2677 aaKnown RBP11.97□□□□□ -0.49
SS18-215ENST00000580642 PLXNB1O43157 2135 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 TRAV30A0A087WSZ9 112 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 C17orf112F2Z3M2 114 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 G3V318 75 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 K7EIM0 57 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 NDUFA7O95182 113 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 MT-CO2P00403 227 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 SERF2P84101 59 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 GAMTQ14353 236 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 TREML4Q6UXN2 200 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 ZNF767PQ75MW2 155 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 ZNF709Q8N972 641 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 THAP8Q8NA92 274 aa11.96□□□□□ -0.49
SS18-215ENST00000580642 FNDC4Q9H6D8 234 aaPredicted RBP11.96□□□□□ -0.49
SS18-215ENST00000580642 A0A0G2JLM5 398 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 UBE2L5PA0A1B0GUS4 154 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 CYSRT1A8MQ03 144 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 ELANEP08246 267 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 SPP1P10451 314 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 NPBWR1P48145 328 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 MFAP4P55083 255 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 SELENOTP62341 195 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 AKR1C1Q04828 323 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 Q6ZS46 218 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 OR2G3Q8NGZ4 309 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 LRRC20Q8TCA0 184 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 FBXL7Q9UJT9 491 aa11.95□□□□□ -0.5
SS18-215ENST00000580642 TRBV7-1A0A0A6YYK4 115 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 UMAD1C9J7I0 102 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 RGS13O14921 159 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 FABP1P07148 127 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 RAB5CP51148 216 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 FOXE3Q13461 319 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 TEX38Q6PEX7 206 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 BTNL8Q6UX41 500 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 Q71RC1 249 aaPredicted RBP11.94□□□□□ -0.5
SS18-215ENST00000580642 RNF152Q8N8N0 203 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 ZNF680Q8NEM1 530 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 SCARB1Q8WTV0 552 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 C21orf62Q9NYP8 219 aa11.94□□□□□ -0.5
SS18-215ENST00000580642 SMCO3A2RU48 225 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 CLN5O75503 358 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 CFDP00746 253 aaPredicted RBP11.93□□□□□ -0.5
SS18-215ENST00000580642 MBP02144 154 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 FGF7P21781 194 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 ATP6V0CP27449 155 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 PSMB8P28062 276 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 RPL29P47914 159 aaKnown RBP11.93□□□□□ -0.5
SS18-215ENST00000580642 RHOGP84095 191 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 Q6ZSV7 163 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 EEF1AKMT3Q96AZ1 226 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 NOL4LQ96MY1 436 aaPredicted RBP11.93□□□□□ -0.5
SS18-215ENST00000580642 DUX5Q96PT3 197 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 TRGV9Q99603 122 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 NPCDR1Q9BY65 106 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 ZNF355PQ9NSJ1 428 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 SERTAD4Q9NUC0 356 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 MTORP42345 2549 aa11.93□□□□□ -0.5
SS18-215ENST00000580642 F8P00451 2351 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 NSD1Q96L73 2696 aaPredicted RBP11.92□□□□□ -0.5
SS18-215ENST00000580642 PSMB11A5LHX3 300 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 OR2J3O76001 311 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 NDUFB8O95169 186 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 CAMLGP49069 296 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 RND2P52198 227 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 ATP5G2Q06055 141 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 C15orf32Q32M92 178 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 ACSM6Q6P461 480 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 HSD17B11Q8NBQ5 300 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 WFDC12Q8WWY7 111 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 NPIPB3Q92617 1050 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 ACY3Q96HD9 319 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 UBQLN2Q9UHD9 624 aa11.92□□□□□ -0.5
SS18-215ENST00000580642 A0A1B0GUS0 222 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 PRH1P02810 166 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 TRGV3P03979 118 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 RAB9AP51151 201 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 IFITM2Q01629 132 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 MLANAQ16655 118 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 PXDC1Q5TGL8 231 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 DPPA3Q6W0C5 159 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 C19orf35Q6ZS72 473 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 OR4F5Q8NH21 305 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 ZNF502Q8TBZ5 544 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 RNF141Q8WVD5 230 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 C19orf24Q9BVV8 132 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 SLC25A32Q9H2D1 315 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 LINC00527Q9UJ94 153 aa11.91□□□□□ -0.5
SS18-215ENST00000580642 TCRBV4S1A1TA0A5B7 111 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 ZFP92A6NM28 416 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 AGPAT2O15120 278 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 IGLC1P0CG04 106 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 PF4V1P10720 104 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 TPPP2P59282 170 aa11.9□□□□□ -0.5
SS18-215ENST00000580642 YPEL3P61236 119 aaPredicted RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms