RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PQLC1Q8N2U9 271 aa10.83□□□□□ -0.68
VPS53-218ENST00000575207 OR13F1Q8NGS4 319 aa10.83□□□□□ -0.68
VPS53-218ENST00000575207 FAM107BQ9H098 131 aa10.83□□□□□ -0.68
VPS53-218ENST00000575207 SCPEP1Q9HB40 452 aa10.83□□□□□ -0.68
VPS53-218ENST00000575207 OR51B2Q9Y5P1 312 aa10.83□□□□□ -0.68
VPS53-218ENST00000575207 DENRO43583 198 aaKnown RBP10.82□□□□□ -0.68
VPS53-218ENST00000575207 NXPH4O95158 308 aa10.82□□□□□ -0.68
VPS53-218ENST00000575207 TMEM50AO95807 157 aa10.82□□□□□ -0.68
VPS53-218ENST00000575207 P2RY14Q15391 338 aa10.82□□□□□ -0.68
VPS53-218ENST00000575207 AMIGO2Q86SJ2 522 aa10.82□□□□□ -0.68
VPS53-218ENST00000575207 IGF2BP2-AS1Q96M15 143 aa10.82□□□□□ -0.68
VPS53-218ENST00000575207 ARL2BPQ9Y2Y0 163 aa10.82□□□□□ -0.68
VPS53-218ENST00000575207 U3KQE9 123 aa10.82□□□□□ -0.68
VPS53-218ENST00000575207 TRAV9-2A0A087WT02 112 aa10.81□□□□□ -0.68
VPS53-218ENST00000575207 RASSF2P50749 326 aa10.81□□□□□ -0.68
VPS53-218ENST00000575207 RORCP51449 518 aa10.81□□□□□ -0.68
VPS53-218ENST00000575207 RAB3CQ96E17 227 aa10.81□□□□□ -0.68
VPS53-218ENST00000575207 ABHD1Q96SE0 405 aa10.81□□□□□ -0.68
VPS53-218ENST00000575207 A0A096LPF7 62 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 MARCH11A6NNE9 402 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 K7EP13 123 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 SULT1C2O00338 296 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 CTXN2P0C2S0 81 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 SPATA31B1PQ5VZV4 182 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 OR10J6PQ8NGY7 276 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 PHYHIPQ92561 330 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 TMEM230Q96A57 120 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 CHAC1Q9BUX1 264 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 PLEKHA2Q9HB19 425 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 OAZ3Q9UMX2 235 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 NSG2Q9Y328 171 aa10.8□□□□□ -0.68
VPS53-218ENST00000575207 MYL12AP19105 171 aa10.79□□□□□ -0.68
VPS53-218ENST00000575207 AZU1P20160 251 aa10.79□□□□□ -0.68
VPS53-218ENST00000575207 HOXA5P20719 270 aa10.79□□□□□ -0.68
VPS53-218ENST00000575207 TALDO1P37837 337 aa10.79□□□□□ -0.68
VPS53-218ENST00000575207 ERVK-16P61578 105 aa10.79□□□□□ -0.68
VPS53-218ENST00000575207 FAM78BQ5VT40 261 aa10.79□□□□□ -0.68
VPS53-218ENST00000575207 RHOXF1Q8NHV9 184 aa10.79□□□□□ -0.68
VPS53-218ENST00000575207 LINC00052Q96N35 136 aa10.79□□□□□ -0.68
VPS53-218ENST00000575207 ARGLU1Q9NWB6 273 aaPredicted RBP10.79□□□□□ -0.68
VPS53-218ENST00000575207 COMMD9Q9P000 198 aa10.79□□□□□ -0.68
VPS53-218ENST00000575207 CLEC2DQ9UHP7 191 aa10.79□□□□□ -0.68
VPS53-218ENST00000575207 MFNGO00587 321 aa10.78□□□□□ -0.68
VPS53-218ENST00000575207 IGLV2-8P01709 118 aa10.78□□□□□ -0.68
VPS53-218ENST00000575207 B2MP61769 119 aa10.78□□□□□ -0.68
VPS53-218ENST00000575207 CATR1Q13166 79 aa10.78□□□□□ -0.68
VPS53-218ENST00000575207 INSL4Q14641 139 aa10.78□□□□□ -0.68
VPS53-218ENST00000575207 Q6ZRU5 148 aa10.78□□□□□ -0.68
VPS53-218ENST00000575207 TPRA1Q86W33 373 aa10.78□□□□□ -0.68
VPS53-218ENST00000575207 PLGRKTQ9HBL7 147 aa10.78□□□□□ -0.68
VPS53-218ENST00000575207 ORC6Q9Y5N6 252 aa10.78□□□□□ -0.68
VPS53-218ENST00000575207 A0A075B6Q4 140 aa10.77□□□□□ -0.69
VPS53-218ENST00000575207 DBX1A6NMT0 343 aa10.77□□□□□ -0.69
VPS53-218ENST00000575207 SNAPC5O75971 98 aa10.77□□□□□ -0.69
VPS53-218ENST00000575207 HNRNPCP07910 306 aaKnown RBP eCLIP10.77□□□□□ -0.691e-6■■□□□ 11.4
VPS53-218ENST00000575207 RPL37AP61513 92 aaKnown RBP10.77□□□□□ -0.69
VPS53-218ENST00000575207 ZIK1Q3SY52 487 aaPredicted RBP10.77□□□□□ -0.69
VPS53-218ENST00000575207 SIGLEC15Q6ZMC9 328 aa10.77□□□□□ -0.69
VPS53-218ENST00000575207 ZNF485Q8NCK3 441 aa10.77□□□□□ -0.69
VPS53-218ENST00000575207 CCL28Q9NRJ3 127 aa10.77□□□□□ -0.69
VPS53-218ENST00000575207 TIMM8BQ9Y5J9 83 aaPredicted RBP10.77□□□□□ -0.69
VPS53-218ENST00000575207 ERICH4A6NGS2 130 aa10.76□□□□□ -0.69
VPS53-218ENST00000575207 PAX9P55771 341 aa10.76□□□□□ -0.69
VPS53-218ENST00000575207 MSMO1Q15800 293 aa10.76□□□□□ -0.69
VPS53-218ENST00000575207 EBLN2Q6P2I7 272 aa10.76□□□□□ -0.69
VPS53-218ENST00000575207 CIRBP-AS1Q8TBR5 109 aa10.76□□□□□ -0.69
VPS53-218ENST00000575207 FKBP11Q9NYL4 201 aa10.76□□□□□ -0.69
VPS53-218ENST00000575207 PRNDQ9UKY0 176 aa10.76□□□□□ -0.69
VPS53-218ENST00000575207 POMPQ9Y244 141 aa10.76□□□□□ -0.69
VPS53-218ENST00000575207 LY96Q9Y6Y9 160 aa10.76□□□□□ -0.69
VPS53-218ENST00000575207 F6UB75 175 aa10.75□□□□□ -0.69
VPS53-218ENST00000575207 SLC17A2O00624 439 aa10.75□□□□□ -0.69
VPS53-218ENST00000575207 PSCAO43653 123 aa10.75□□□□□ -0.69
VPS53-218ENST00000575207 INSP01308 110 aa10.75□□□□□ -0.69
VPS53-218ENST00000575207 ALPLP05186 524 aa10.75□□□□□ -0.69
VPS53-218ENST00000575207 CD1AP06126 327 aa10.75□□□□□ -0.69
VPS53-218ENST00000575207 CALB2P22676 271 aa10.75□□□□□ -0.69
VPS53-218ENST00000575207 COQ8AQ8NI60 647 aa10.75□□□□□ -0.69
VPS53-218ENST00000575207 SECTM1Q8WVN6 248 aa10.75□□□□□ -0.69
VPS53-218ENST00000575207 DIMT1Q9UNQ2 313 aaKnown RBP10.75□□□□□ -0.69
VPS53-218ENST00000575207 SCGB2A1O75556 95 aa10.74□□□□□ -0.69
VPS53-218ENST00000575207 ADAP1O75689 374 aa10.74□□□□□ -0.69
VPS53-218ENST00000575207 HIST1H1DP16402 221 aaKnown RBP10.74□□□□□ -0.69
VPS53-218ENST00000575207 GADD45AP24522 165 aa10.74□□□□□ -0.69
VPS53-218ENST00000575207 ID1P41134 155 aa10.74□□□□□ -0.69
VPS53-218ENST00000575207 ASAH1Q13510 395 aa10.74□□□□□ -0.69
VPS53-218ENST00000575207 ACOT6Q3I5F7 207 aaPredicted RBP10.74□□□□□ -0.69
VPS53-218ENST00000575207 TMED4Q7Z7H5 227 aa10.74□□□□□ -0.69
VPS53-218ENST00000575207 LINC00612Q8N6U2 182 aa10.74□□□□□ -0.69
VPS53-218ENST00000575207 ZBTB34Q8NCN2 500 aa10.74□□□□□ -0.69
VPS53-218ENST00000575207 OR51H1Q8NH63 302 aa10.74□□□□□ -0.69
VPS53-218ENST00000575207 NOP10Q9NPE3 64 aaKnown RBP10.74□□□□□ -0.69
VPS53-218ENST00000575207 A0A0J9YX75 114 aa10.73□□□□□ -0.69
VPS53-218ENST00000575207 A8MTW9 85 aa10.73□□□□□ -0.69
VPS53-218ENST00000575207 CLN5O75503 358 aa10.73□□□□□ -0.69
VPS53-218ENST00000575207 DTYMKP23919 212 aa10.73□□□□□ -0.69
VPS53-218ENST00000575207 PSMB3P49720 205 aa10.73□□□□□ -0.69
VPS53-218ENST00000575207 RAB11BQ15907 218 aa10.73□□□□□ -0.69
VPS53-218ENST00000575207 SMN1Q16637 294 aaKnown RBP10.73□□□□□ -0.69
VPS53-218ENST00000575207 AMTNQ6UX39 209 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms