RNA–Protein interactions for RNA: ENST00000574099.1

CCDC40-211, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 537 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-211ENST00000574099 FGF9P31371 208 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-211ENST00000574099 CBX5P45973 191 aa12.5□□□□□ -0.41
CCDC40-211ENST00000574099 IDNKQ5T6J7 187 aa12.5□□□□□ -0.41
CCDC40-211ENST00000574099 NRG4Q8WWG1 115 aa12.5□□□□□ -0.41
CCDC40-211ENST00000574099 SEC22AQ96IW7 307 aa12.5□□□□□ -0.41
CCDC40-211ENST00000574099 C1QTNF4Q9BXJ3 329 aa12.5□□□□□ -0.41
CCDC40-211ENST00000574099 MRPL36Q9P0J6 103 aaKnown RBP12.5□□□□□ -0.41
CCDC40-211ENST00000574099 SPART-AS1P0CW21 52 aa12.49□□□□□ -0.41
CCDC40-211ENST00000574099 CRYBB3P26998 211 aa12.49□□□□□ -0.41
CCDC40-211ENST00000574099 PSMB9P28065 219 aa12.49□□□□□ -0.41
CCDC40-211ENST00000574099 SDC2P34741 201 aa12.49□□□□□ -0.41
CCDC40-211ENST00000574099 HSPE1P61604 102 aaKnown RBP12.49□□□□□ -0.41
CCDC40-211ENST00000574099 TNP2Q05952 138 aa12.49□□□□□ -0.41
CCDC40-211ENST00000574099 IZUMO4Q1ZYL8 232 aa12.49□□□□□ -0.41
CCDC40-211ENST00000574099 DHRS11Q6UWP2 260 aa12.49□□□□□ -0.41
CCDC40-211ENST00000574099 TMEM230Q96A57 120 aa12.49□□□□□ -0.41
CCDC40-211ENST00000574099 MRGPRFQ96AM1 343 aa12.49□□□□□ -0.41
CCDC40-211ENST00000574099 NARS2Q96I59 477 aaKnown RBP12.49□□□□□ -0.41
CCDC40-211ENST00000574099 DIABLOQ9NR28 239 aa12.49□□□□□ -0.41
CCDC40-211ENST00000574099 IGHV3OR16-12A0A075B7B8 117 aa12.48□□□□□ -0.41
CCDC40-211ENST00000574099 A0A0A6YYH2 397 aa12.48□□□□□ -0.41
CCDC40-211ENST00000574099 A6NJ64 397 aa12.48□□□□□ -0.41
CCDC40-211ENST00000574099 IGKV1-39P01597 117 aa12.48□□□□□ -0.41
CCDC40-211ENST00000574099 IGKV1D-39P04432 117 aa12.48□□□□□ -0.41
CCDC40-211ENST00000574099 NUTF2P61970 127 aaKnown RBP12.48□□□□□ -0.41
CCDC40-211ENST00000574099 OR5H2Q8NGV7 314 aa12.48□□□□□ -0.41
CCDC40-211ENST00000574099 CNBD2Q96M20 576 aa12.48□□□□□ -0.41
CCDC40-211ENST00000574099 BLOC1S6Q9UL45 172 aa12.48□□□□□ -0.41
CCDC40-211ENST00000574099 LRP1BQ9NZR2 4599 aa12.47□□□□□ -0.41
CCDC40-211ENST00000574099 SNCAP37840 140 aa12.47□□□□□ -0.41
CCDC40-211ENST00000574099 FXYD7P58549 80 aa12.47□□□□□ -0.41
CCDC40-211ENST00000574099 TBC1D26Q86UD7 250 aa12.47□□□□□ -0.41
CCDC40-211ENST00000574099 SLC35G3Q8N808 338 aa12.47□□□□□ -0.41
CCDC40-211ENST00000574099 RNF167Q9H6Y7 350 aa12.47□□□□□ -0.41
CCDC40-211ENST00000574099 SSR3Q9UNL2 185 aa12.47□□□□□ -0.41
CCDC40-211ENST00000574099 CLN5O75503 358 aa12.46□□□□□ -0.41
CCDC40-211ENST00000574099 OPRK1P41145 380 aa12.46□□□□□ -0.41
CCDC40-211ENST00000574099 EIF2B2P49770 351 aaKnown RBP12.46□□□□□ -0.41
CCDC40-211ENST00000574099 SCAND1P57086 179 aa12.46□□□□□ -0.41
CCDC40-211ENST00000574099 MLANAQ16655 118 aa12.46□□□□□ -0.41
CCDC40-211ENST00000574099 TIGITQ495A1 244 aa12.46□□□□□ -0.41
CCDC40-211ENST00000574099 RNF212Q495C1 297 aa12.46□□□□□ -0.41
CCDC40-211ENST00000574099 KCTD21Q4G0X4 260 aa12.46□□□□□ -0.41
CCDC40-211ENST00000574099 FAM210BQ96KR6 192 aa12.46□□□□□ -0.41
CCDC40-211ENST00000574099 FNDC4Q9H6D8 234 aaPredicted RBP12.46□□□□□ -0.41
CCDC40-211ENST00000574099 H3BMM0 161 aa12.45□□□□□ -0.42
CCDC40-211ENST00000574099 IGKV3-20P01619 116 aa12.45□□□□□ -0.42
CCDC40-211ENST00000574099 TAS2R46P59540 309 aa12.45□□□□□ -0.42
CCDC40-211ENST00000574099 FAM222AQ5U5X8 452 aa12.45□□□□□ -0.42
CCDC40-211ENST00000574099 ZNF705AQ6ZN79 300 aaPredicted RBP12.45□□□□□ -0.42
CCDC40-211ENST00000574099 OR6F1Q8NGZ6 308 aa12.45□□□□□ -0.42
CCDC40-211ENST00000574099 GLMPQ8WWB7 406 aa12.45□□□□□ -0.42
CCDC40-211ENST00000574099 NIPSNAP3BQ9BS92 247 aa12.45□□□□□ -0.42
CCDC40-211ENST00000574099 DKK2Q9UBU2 259 aa12.45□□□□□ -0.42
CCDC40-211ENST00000574099 TMEM189A5PLL7 270 aa12.44□□□□□ -0.42
CCDC40-211ENST00000574099 ZNF705FA8MVS1 300 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-211ENST00000574099 FAM90A26D6RGX4 464 aa12.44□□□□□ -0.42
CCDC40-211ENST00000574099 ZNF705DP0CH99 300 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-211ENST00000574099 ZNF705BP0CI00 300 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-211ENST00000574099 RNASE2P10153 161 aaKnown RBP12.44□□□□□ -0.42
CCDC40-211ENST00000574099 S100GP29377 79 aa12.44□□□□□ -0.42
CCDC40-211ENST00000574099 SNRPD3P62318 126 aaKnown RBP12.44□□□□□ -0.42
CCDC40-211ENST00000574099 TMEM88Q6PEY1 159 aa12.44□□□□□ -0.42
CCDC40-211ENST00000574099 Q8N1X5 172 aa12.44□□□□□ -0.42
CCDC40-211ENST00000574099 NEU1Q99519 415 aa12.44□□□□□ -0.42
CCDC40-211ENST00000574099 ANAPC10Q9UM13 185 aa12.44□□□□□ -0.42
CCDC40-211ENST00000574099 CORTO00230 105 aa12.43□□□□□ -0.42
CCDC40-211ENST00000574099 SCGB2A1O75556 95 aa12.43□□□□□ -0.42
CCDC40-211ENST00000574099 IGKV1-17P01599 117 aa12.43□□□□□ -0.42
CCDC40-211ENST00000574099 HRH1P35367 487 aa12.43□□□□□ -0.42
CCDC40-211ENST00000574099 HOXA1P49639 335 aaPredicted RBP12.43□□□□□ -0.42
CCDC40-211ENST00000574099 DEFB1P60022 68 aa12.43□□□□□ -0.42
CCDC40-211ENST00000574099 C16orf54Q6UWD8 224 aa12.43□□□□□ -0.42
CCDC40-211ENST00000574099 OR4X1Q8NH49 305 aa12.43□□□□□ -0.42
CCDC40-211ENST00000574099 SCRT2Q9NQ03 307 aa12.43□□□□□ -0.42
CCDC40-211ENST00000574099 FAM212BQ9NTI7 297 aaPredicted RBP12.43□□□□□ -0.42
CCDC40-211ENST00000574099 RFNGQ9Y644 331 aa12.43□□□□□ -0.42
CCDC40-211ENST00000574099 ANKRD65E5RJM6 399 aa12.42□□□□□ -0.42
CCDC40-211ENST00000574099 HNRNPCP07910 306 aaKnown RBP eCLIP12.42□□□□□ -0.42
CCDC40-211ENST00000574099 HLA-DRB4P13762 266 aa12.42□□□□□ -0.42
CCDC40-211ENST00000574099 HLA-DMAP28067 261 aa12.42□□□□□ -0.42
CCDC40-211ENST00000574099 SUB1P53999 127 aaKnown RBP eCLIP12.42□□□□□ -0.42
CCDC40-211ENST00000574099 GDF5OSQ5U4N7 250 aa12.42□□□□□ -0.42
CCDC40-211ENST00000574099 TMED3Q9Y3Q3 217 aa12.42□□□□□ -0.42
CCDC40-211ENST00000574099 U3KQE9 123 aa12.42□□□□□ -0.42
CCDC40-211ENST00000574099 HLA-DRB4X5D2U9 266 aa12.42□□□□□ -0.42
CCDC40-211ENST00000574099 LOC100506127A0A0U1RQW1 187 aa12.41□□□□□ -0.42
CCDC40-211ENST00000574099 SMIM9A6NGZ8 99 aa12.41□□□□□ -0.42
CCDC40-211ENST00000574099 IGKV1-5P01602 117 aa12.41□□□□□ -0.42
CCDC40-211ENST00000574099 APOBP04114 4563 aaKnown RBP12.41□□□□□ -0.42
CCDC40-211ENST00000574099 ETV6P41212 452 aa12.41□□□□□ -0.42
CCDC40-211ENST00000574099 TSPAN5P62079 268 aa12.41□□□□□ -0.42
CCDC40-211ENST00000574099 PDCD10Q9BUL8 212 aa12.41□□□□□ -0.42
CCDC40-211ENST00000574099 TEX48A0A1B0GUV7 120 aa12.4□□□□□ -0.42
CCDC40-211ENST00000574099 NAT1P18440 290 aa12.4□□□□□ -0.42
CCDC40-211ENST00000574099 HSPA13P48723 471 aa12.4□□□□□ -0.42
CCDC40-211ENST00000574099 AKR1C2P52895 323 aa12.4□□□□□ -0.42
CCDC40-211ENST00000574099 AP2S1P53680 142 aaPredicted RBP12.4□□□□□ -0.42
CCDC40-211ENST00000574099 TAS2R20P59543 309 aa12.4□□□□□ -0.42
CCDC40-211ENST00000574099 TMEM69Q5SWH9 247 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms