RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 EGR2P11161 476 aaPredicted RBP5.04□□□□□ -1.6
VPS53-209ENST00000570771 CXCL2P19875 107 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 MDKP21741 143 aaPredicted RBP5.04□□□□□ -1.6
VPS53-209ENST00000570771 OPRK1P41145 380 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 NKX2-5P52952 324 aaPredicted RBP5.04□□□□□ -1.6
VPS53-209ENST00000570771 NHLH2Q02577 135 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 RAB31Q13636 194 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 LGALSLQ3ZCW2 172 aaPredicted RBP5.04□□□□□ -1.6
VPS53-209ENST00000570771 FAM209BQ5JX69 171 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 EIF5AL1Q6IS14 154 aaKnown RBP5.04□□□□□ -1.6
VPS53-209ENST00000570771 SLC51BQ86UW2 128 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 Q8N2B8 174 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 COMMD1Q8N668 190 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 TMEM217Q8N7C4 229 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 OR5C1Q8NGR4 320 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 SCGB1C1Q8TD33 95 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 WIPF2Q8TF74 440 aaPredicted RBP5.04□□□□□ -1.6
VPS53-209ENST00000570771 MISP3Q96FF7 219 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 ATP5SQ99766 215 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 KRTAP4-11Q9BYQ6 195 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 SLA2Q9H6Q3 261 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 NPVFQ9HCQ7 196 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 KCNIP2Q9NS61 270 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 UQCC1Q9NVA1 299 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 GAR1Q9NY12 217 aaKnown RBP5.04□□□□□ -1.6
VPS53-209ENST00000570771 FBXL17Q9UF56 701 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 LINC00527Q9UJ94 153 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 A0A0G2JLM5 398 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 SMCO3A2RU48 225 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 FAM223BA6NKX1 122 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 C17orf112F2Z3M2 114 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 SOX15O60248 233 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 NDUFA7O95182 113 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 FABP1P07148 127 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 APELAP0DMC3 54 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 TPT1P13693 172 aaKnown RBP5.03□□□□□ -1.6
VPS53-209ENST00000570771 DEFA5Q01523 94 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 AKR1C1Q04828 323 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 CD69Q07108 199 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 CLINT1Q14677 625 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 OPCMLQ14982 345 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 TCTEX1D4Q5JR98 221 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 ASPHD1Q5U4P2 390 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 PVRIGQ6DKI7 326 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 LCNL1Q6ZST4 164 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 SLC16A13Q7RTY0 426 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 CENPVQ7Z7K6 275 aaPredicted RBP5.03□□□□□ -1.6
VPS53-209ENST00000570771 FAM223AQ8IWN6 122 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 ZNF709Q8N972 641 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 NECAP1Q8NC96 275 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 OR5T1Q8NG75 326 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 OR4F5Q8NH21 305 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 SPATA3Q8NHX4 192 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 VN1R17PQ8TDU5 208 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 GNPNAT1Q96EK6 184 aaPredicted RBP5.03□□□□□ -1.6
VPS53-209ENST00000570771 CXorf58Q96LI9 332 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 NOL4LQ96MY1 436 aaPredicted RBP5.03□□□□□ -1.6
VPS53-209ENST00000570771 ATP6V0BQ99437 205 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 C19orf24Q9BVV8 132 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 ZNF471Q9BX82 626 aaPredicted RBP5.03□□□□□ -1.6
VPS53-209ENST00000570771 PARD6GQ9BYG4 376 aaPredicted RBP5.03□□□□□ -1.6
VPS53-209ENST00000570771 SERTAD4Q9NUC0 356 aa5.03□□□□□ -1.6
VPS53-209ENST00000570771 IGLV11-55A0A075B6I3 123 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 TRAV30A0A087WSZ9 112 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 TRBV7-1A0A0A6YYK4 115 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 A0A1B0GUS0 222 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 PSMB11A5LHX3 300 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 PMS2P5A8MQ11 134 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 G3V318 75 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 MT-CO2P00403 227 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 IGHG4P01861 327 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 TRGV3P03979 118 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 ELANEP08246 267 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 PF4V1P10720 104 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 NPBWR1P48145 328 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 MFAP4P55083 255 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 RHOGP84095 191 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 FOXE3Q13461 319 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 VWC2Q2TAL6 325 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 KLK9Q2XQG4 91 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 C19orf54Q5BKX5 351 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 LAMTOR1Q6IAA8 161 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 ACSM6Q6P461 480 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 TEX38Q6PEX7 206 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 TEPPQ6URK8 271 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 C18orf65Q6ZTR6 163 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 TMEM144Q7Z5S9 345 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 HAPLN4Q86UW8 402 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 UBAC2Q8NBM4 344 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 TMEM116Q8NCL8 245 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 OR4X2Q8NGF9 303 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 LINC01006Q8NI28 216 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 STOML3Q8TAV4 291 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 EEF1AKMT3Q96AZ1 226 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 USMG5Q96IX5 58 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 TXN2Q99757 166 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 SMIM3Q9BZL3 60 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 C16orf95Q9H693 158 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 FBXL7Q9UJT9 491 aa5.02□□□□□ -1.61
VPS53-209ENST00000570771 KLK9Q9UKQ9 250 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms