RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ZFAND6Q6FIF0 208 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 CGB2Q6NT52 195 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 PRSS54Q6PEW0 395 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 HAGHLQ6PII5 290 aaPredicted RBP2.12□□□□□ -2.07
VPS35-209ENST00000568642 ARL9Q6T311 187 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 SCIMPQ6UWF3 145 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 UGT2A3Q6UWM9 527 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 HRCT1Q6UXD1 115 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 Q6ZS92 163 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 ZNF589Q86UQ0 364 aaPredicted RBP2.12□□□□□ -2.07
VPS35-209ENST00000568642 ZNF440Q8IYI8 595 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 TMEM252Q8N6L7 170 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 C9orf106Q8NAJ2 232 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 LMO3Q8TAP4 145 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 SKA2Q8WVK7 121 aaPredicted RBP2.12□□□□□ -2.07
VPS35-209ENST00000568642 OR5P3Q8WZ94 311 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 NEUROG1Q92886 237 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 OR7D2Q96RA2 312 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 DOHHQ9BU89 302 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 LRRC61Q9BV99 259 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 TMEM147Q9BVK8 224 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 TBL1XR1Q9BZK7 514 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 CHST6Q9GZX3 395 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 FAM96AQ9H5X1 160 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 HES4Q9HCC6 221 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 PARP11Q9NR21 331 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 CISHQ9NSE2 258 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 TP73-AS1Q9UF72 201 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 ZNF580Q9UK33 172 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 CYSLTR1Q9Y271 337 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 PCYT1BQ9Y5K3 369 aaPredicted RBP2.12□□□□□ -2.07
VPS35-209ENST00000568642 SPTBP11277 2137 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 IGLV8-61A0A075B6I0 122 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 IGKV1D-43A0A0B4J1Z2 117 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 A8MUN3 132 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.11□□□□□ -2.07
VPS35-209ENST00000568642 TRAPPC2LH3BP13 241 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 H3BSA7 217 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 M0R381 172 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 LGALS9O00182 355 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 LST1O00453 97 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 SLC17A3O00476 420 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 UPK2O00526 184 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 SOCS2O14508 198 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 TXNDC9O14530 226 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 MYL12BO14950 172 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 TNFSF13O75888 250 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 BGLAPP02818 100 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 SERPINE1P05121 402 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 CRYBA1P05813 215 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 SMIM6P0DI80 62 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 PSG2P11465 335 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 ZNF25P17030 456 aaPredicted RBP2.11□□□□□ -2.07
VPS35-209ENST00000568642 ORM2P19652 201 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 GADD45AP24522 165 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 PHBP35232 272 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 TALDO1P37837 337 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 SLC18A1P54219 525 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 MP68P56378 58 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 LINC00205P59089 165 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 DEFA3P59666 94 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 GRB2P62993 217 aaKnown RBP2.11□□□□□ -2.07
VPS35-209ENST00000568642 PSG9Q00887 426 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 TFF3Q07654 80 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 LAMTOR4Q0VGL1 99 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 DHRS2Q13268 280 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 IL34Q6ZMJ4 242 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 ZNF497Q6ZNH5 498 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 ATP5L2Q7Z4Y8 100 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 ZNF584Q8IVC4 421 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 MKXQ8IYA7 352 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 C20orf196Q8IYI0 205 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 ZNF645Q8N7E2 425 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 GDPD1Q8N9F7 314 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 OR8S1Q8NH09 359 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 GTSF1Q8WW33 167 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 RNASE6Q93091 150 aaKnown RBP2.11□□□□□ -2.07
VPS35-209ENST00000568642 SLC35G5Q96KT7 338 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 OR2M4Q96R27 311 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 HSPB9Q9BQS6 159 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 TM2D3Q9BRN9 247 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 NDFIP1Q9BT67 221 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 POPDC3Q9HBV1 291 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 ZNF492Q9P255 531 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 DHCR7Q9UBM7 475 aaKnown RBP2.11□□□□□ -2.07
VPS35-209ENST00000568642 CACNG5Q9UF02 275 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 HSPB8Q9UJY1 196 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 ERG28Q9UKR5 140 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 ZNF706Q9Y5V0 76 aaPredicted RBP2.11□□□□□ -2.07
VPS35-209ENST00000568642 PXMP4Q9Y6I8 212 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 COX11Q9Y6N1 276 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 ANKRD12Q6UB98 2062 aa2.11□□□□□ -2.07
VPS35-209ENST00000568642 C5orf49A4QMS7 147 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 OR4C45A6NMZ5 311 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 PMS2P5A8MQ11 134 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 A8MXK9 166 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 J3KT08 172 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 M0R1X1 148 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 MRASO14807 208 aa2.1□□□□□ -2.07
VPS35-209ENST00000568642 RGS5O15539 181 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms