RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 CORTO00230 105 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 TGOLN2O43493 480 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 ENSAO43768 121 aaKnown RBP4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 SLC25A17O43808 307 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 NDUFA3O95167 84 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 IGHV2-5P01817 119 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 OPN1MWP04001 364 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 OPN1MW2P0DN77 364 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 OPN1MW3P0DN78 364 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 CD99P14209 185 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 NPPCP23582 126 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 OR10J1P30954 320 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 PLA2G5P39877 138 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 TAS2R45P59539 299 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 PLP1P60201 277 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 RAB5BP61020 215 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 ARF6P62330 175 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 RPL23P62829 140 aaKnown RBP4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 ELOBQ15370 118 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 GCSAMLQ5JQS6 135 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 LDLRAD2Q5SZI1 272 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 SLC16A13Q7RTY0 426 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 FAM24BQ8N5W8 94 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 TMEM116Q8NCL8 245 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 OR1P1Q8NH06 330 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 OR4F5Q8NH21 305 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 CFHR4Q92496 578 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 OR4F4Q96R69 305 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 TRGV9Q99603 122 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 SMIM7Q9BQ49 75 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 PYGO2Q9BRQ0 406 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 SLC25A33Q9BSK2 321 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 C20orf24Q9BUV8 137 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 MRPL32Q9BYC8 188 aaKnown RBP4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 PARLQ9H300 379 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 FNDC4Q9H6D8 234 aaPredicted RBP4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 SEPSECSQ9HD40 501 aaKnown RBP4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 DNAJC4Q9NNZ3 241 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 BIN3Q9NQY0 253 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 TECRQ9NZ01 308 aaKnown RBP4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 MLXQ9UH92 298 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 FUT9Q9Y231 359 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 LY96Q9Y6Y9 160 aa4.8□□□□□ -1.64
VIPAS39-204ENST00000553576 TPRP12270 2363 aaKnown RBP4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 ZZEF1O43149 2961 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 A0A1W2PRE2 83 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 TCRBV4S1A1TA0A5B7 111 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 TEX22C9J3V5 150 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 C19orf84I3L1E1 186 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 HMGB3O15347 200 aaKnown RBP4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 LY6HO94772 140 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 ACTL6BO94805 426 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 MOSP00540 346 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 PFN1P07737 140 aaKnown RBP4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 ARL14EPLP0DKL9 152 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 C8orf88P0DMB2 117 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 AKR1C3P42330 323 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 UQCRFS1P47985 274 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 LMO4P61968 165 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 SSBP2P81877 361 aaPredicted RBP4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 AKIRIN2Q53H80 203 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 FAM78BQ5VT40 261 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 CCDC144NLQ6NUI1 221 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 Q8N6K4 173 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 OR1L6Q8NGR2 347 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 OR1L4Q8NGR5 311 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 SSMEM1Q8WWF3 244 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 TMEM37Q8WXS4 190 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 NPIPB3Q92617 1050 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 C11orf52Q96A22 123 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 ISOC2Q96AB3 205 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 EAF1Q96JC9 268 aaPredicted RBP4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 IMMP2LQ96T52 175 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 PFDN5Q99471 154 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 SIRPDQ9H106 197 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 ONECUT1Q9UBC0 465 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 METTL1Q9UBP6 276 aaKnown RBP4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 TBL2Q9Y4P3 447 aaKnown RBP4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 F11RQ9Y624 299 aaKnown RBP4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 LRBAP50851 2863 aa4.79□□□□□ -1.64
VIPAS39-204ENST00000553576 RELNP78509 3460 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 CACNA1AO00555 2505 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 DCHS2Q6V1P9 2916 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 IGHV3-72A0A0B4J1Y9 119 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 C5orf52A6NGY3 159 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 C9JCJ5 164 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 FCN1O00602 326 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 TIMM23O14925 209 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 PPP1R2P9O14990 202 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 NBR2O15453 112 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 FOXH1O75593 365 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 EIF3GO75821 320 aaKnown RBP eCLIP4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 DEFA4P12838 97 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 COX7A1P24310 79 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 ZFP36P26651 326 aaKnown RBP4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 CNTFRP26992 372 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 CDKN1AP38936 164 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 UBE2E1P51965 193 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 CEBPGP53567 150 aa4.78□□□□□ -1.64
VIPAS39-204ENST00000553576 MFAP2P55001 183 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms