RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 OR13A1Q8NGR1 328 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 GRAMD2BQ96HH9 432 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 YPEL4Q96NS1 127 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 JKAMPQ9P055 326 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 MRPS16Q9Y3D3 137 aaKnown RBP11.86□□□□□ -0.51
LIMS1-215ENST00000544547 LSM4Q9Y4Z0 139 aaKnown RBP11.86□□□□□ -0.51
LIMS1-215ENST00000544547 IGHV2OR16-5A0A0B4J2B6 119 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 H3BVH4 76 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 BMI1P35226 326 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 RPL15P61313 204 aaKnown RBP11.85□□□□□ -0.51
LIMS1-215ENST00000544547 CX3CL1P78423 397 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 NPIPB3Q92617 1050 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 LINC00479Q96M42 142 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 TNFRSF19Q9NS68 423 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 NOTCH2Q04721 2471 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 A0A1W2PRE2 83 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 F2RL2O00254 374 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 PYYP10082 97 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 CDKN1BP46527 198 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 YPEL3P61236 119 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-215ENST00000544547 ZFP36L1Q07352 338 aaKnown RBP11.85□□□□□ -0.51
LIMS1-215ENST00000544547 Q0VG73 95 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 RSPO1Q2MKA7 263 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-215ENST00000544547 SLC25A53Q5H9E4 307 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 LHFPL4Q7Z7J7 247 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 SAP25Q8TEE9 199 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 DPF1Q92782 380 aa11.85□□□□□ -0.51
LIMS1-215ENST00000544547 KIF26AQ9ULI4 1882 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-215ENST00000544547 CCL21O00585 134 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 FAM53AQ6NSI3 398 aaPredicted RBP11.84□□□□□ -0.51
LIMS1-215ENST00000544547 OR1L8Q8NGR8 309 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 DNASE2BQ8WZ79 361 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 FAM222BQ8WU58 562 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 LOC107984156A0A0G2JMH3 177 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 PDLIM4P50479 330 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 PSG9Q00887 426 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 ARL17AQ8IVW1 177 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 PERPQ96FX8 193 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 ST20Q9HBF5 79 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 REG1AP05451 166 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 FTH1P19P0C7X4 201 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 NTF4P34130 210 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 MPV17P39210 176 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 MGST2Q99735 147 aa11.84□□□□□ -0.51
LIMS1-215ENST00000544547 IGLV3-12A0A075B6K2 115 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 PPIAL4EA0A075B759 164 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 TRAV5A0A0B4J249 113 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 CELA3AP09093 270 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 PPIAL4FP0DN26 164 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 CD24P25063 80 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 FADS6Q8N9I5 356 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 OBSL1O75147 1896 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 FOXI3A8MTJ6 420 aaPredicted RBP11.83□□□□□ -0.52
LIMS1-215ENST00000544547 PEX7O00628 323 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 MGST3O14880 152 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 SMIM13P0DJ93 91 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 PTGDSP41222 190 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 HIST1H1AQ02539 215 aaPredicted RBP11.83□□□□□ -0.52
LIMS1-215ENST00000544547 SCGB1D4Q6XE38 83 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 TMEM136Q6ZRR5 245 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 CCL13Q99616 98 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 UBTD1Q9HAC8 227 aa11.83□□□□□ -0.52
LIMS1-215ENST00000544547 RANBP2P49792 3224 aaKnown RBP11.83□□□□□ -0.52
LIMS1-215ENST00000544547 MOSP00540 346 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 FRMD6-AS1P0C7T7 363 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 NPPCP23582 126 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 ZNRF1Q8ND25 227 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 RASL11BQ9BPW5 248 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 ZNF788Q6ZQV5 615 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 C17orf82Q86X59 251 aaPredicted RBP11.82□□□□□ -0.52
LIMS1-215ENST00000544547 TMEM186Q96B77 213 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 ZC2HC1AQ96GY0 325 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 UNC80Q8N2C7 3258 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 OR1N2Q8NGR9 330 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 SLC25A10Q9UBX3 287 aaPredicted RBP11.82□□□□□ -0.52
LIMS1-215ENST00000544547 CKS2P33552 79 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 TMEM42Q69YG0 159 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 SFTA2Q6UW10 78 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 C18orf32Q8TCD1 76 aa11.82□□□□□ -0.52
LIMS1-215ENST00000544547 ORM1P02763 201 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 GOLT1AQ6ZVE7 132 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 OR9G1Q8NH87 305 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 GP6Q9HCN6 339 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 UFC1Q9Y3C8 167 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 TRAV3A0A0B4J244 114 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 TRAV8-6A0A0B4J262 113 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 C15orf62A8K5M9 175 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 ACP1P24666 158 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 SRSF9Q13242 221 aaKnown RBP eCLIP11.81□□□□□ -0.52
LIMS1-215ENST00000544547 Q1RN00 199 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 SIGMAR1Q99720 223 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 PILRBQ9UKJ0 227 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 IGHV3-72A0A0B4J1Y9 119 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 ZNF716A6NP11 495 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 FXYD7P58549 80 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 CLEC2AQ6UVW9 174 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 ZNF497Q6ZNH5 498 aa11.81□□□□□ -0.52
LIMS1-215ENST00000544547 SNRNP40Q96DI7 357 aaKnown RBP11.81□□□□□ -0.52
LIMS1-215ENST00000544547 PEAR1Q5VY43 1037 aaPredicted RBP11.8□□□□□ -0.52
LIMS1-215ENST00000544547 WDR31Q8NA23 367 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms