RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SRSF4Q08170 494 aaKnown RBP9.72□□□□□ -0.85
SYNPO-204ENST00000519664 FBLN7Q53RD9 439 aa9.72□□□□□ -0.85
SYNPO-204ENST00000519664 CD177Q8N6Q3 437 aa9.72□□□□□ -0.85
SYNPO-204ENST00000519664 RBFOX2O43251 390 aaKnown RBP eCLIP9.72□□□□□ -0.85
SYNPO-204ENST00000519664 CA1P00915 261 aaPredicted RBP9.72□□□□□ -0.85
SYNPO-204ENST00000519664 PYYP10082 97 aa9.72□□□□□ -0.85
SYNPO-204ENST00000519664 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.72□□□□□ -0.85
SYNPO-204ENST00000519664 SNHG12Q9BXW3 62 aa9.72□□□□□ -0.85
SYNPO-204ENST00000519664 MAP1LC3CQ9BXW4 147 aa9.72□□□□□ -0.85
SYNPO-204ENST00000519664 RANBP2P49792 3224 aaKnown RBP9.71□□□□□ -0.85
SYNPO-204ENST00000519664 ST6GALNAC3Q8NDV1 305 aa9.71□□□□□ -0.85
SYNPO-204ENST00000519664 TMEM242Q9NWH2 141 aa9.71□□□□□ -0.85
SYNPO-204ENST00000519664 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.71□□□□□ -0.86
SYNPO-204ENST00000519664 IGHV3-66A0A0C4DH42 116 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 TNFSF13O75888 250 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 HLA-DQA1P01909 254 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 WDR31Q8NA23 367 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 OCC1Q8TAD7 63 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 COQ2Q96H96 371 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 BRCA2P51587 3418 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 CORTO00230 105 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 PPOXP50336 477 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 GAGE1Q13065 139 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 LDLRAD2Q5SZI1 272 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 CCDC144NLQ6NUI1 221 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 OSR1Q8TAX0 266 aaPredicted RBP9.71□□□□□ -0.86
SYNPO-204ENST00000519664 ZNRD1Q9P1U0 126 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 ABCA2Q9BZC7 2435 aa9.71□□□□□ -0.86
SYNPO-204ENST00000519664 SETD2Q9BYW2 2564 aaPredicted RBP9.7□□□□□ -0.86
SYNPO-204ENST00000519664 ITGB1BP1O14713 200 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 YPEL1O60688 119 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 YPEL2Q96QA6 119 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 CDC42EP3Q9UKI2 254 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 M0QZ24 198 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 VENTXO95231 258 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 MAS1LP35410 378 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 TWIST1Q15672 202 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 LY6EQ16553 131 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 SPATA31B1PQ5VZV4 182 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 Q6P435 159 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 MDS2Q8NDY4 140 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 FAM57AQ8TBR7 257 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 KIAA1671Q9BY89 1806 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 SRRM5B3KS81 715 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 IGHV1-46P01743 117 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 AMY1AP04745 511 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 GNG5P63218 68 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 MLANAQ16655 118 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 RPRMLQ8N4K4 120 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 PEF1Q9UBV8 284 aaKnown RBP9.7□□□□□ -0.86
SYNPO-204ENST00000519664 WDR83OSQ9Y284 106 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 DPRXA6NFQ7 191 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 ETV2O00321 342 aaPredicted RBP9.7□□□□□ -0.86
SYNPO-204ENST00000519664 SLC25A34Q6PIV7 304 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 PRDM13Q9H4Q3 707 aa9.7□□□□□ -0.86
SYNPO-204ENST00000519664 MKI67P46013 3256 aaKnown RBP9.69□□□□□ -0.86
SYNPO-204ENST00000519664 IFITM10A6NMD0 228 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 LIPFP07098 398 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 PF4V1P10720 104 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 CEACAM1P13688 526 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 CD33P20138 364 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 APOBEC3AP31941 199 aaPredicted RBP9.69□□□□□ -0.86
SYNPO-204ENST00000519664 TREML4Q6UXN2 200 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 TMEM116Q8NCL8 245 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 FOXA2Q9Y261 457 aaPredicted RBP9.69□□□□□ -0.86
SYNPO-204ENST00000519664 TANC1Q9C0D5 1861 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 TRAV5A0A0B4J249 113 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.69□□□□□ -0.86
SYNPO-204ENST00000519664 A0A1B0GW64 132 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 NPSP0C0P6 89 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 EFNB3Q15768 340 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 SPANXN1Q5VSR9 72 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 FOXL2NBQ6ZUU3 175 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 SEPSECSQ9HD40 501 aaKnown RBP9.69□□□□□ -0.86
SYNPO-204ENST00000519664 C5orf42Q9H799 3197 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 LOC105371242A0A075B767 164 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 LEPROTL1O95214 131 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 ZNF585BQ52M93 769 aa9.69□□□□□ -0.86
SYNPO-204ENST00000519664 PLXNB1O43157 2135 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 TMEM189A5PLL7 270 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 MGPP08493 103 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 TMEM144Q7Z5S9 345 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 SSBP4Q9BWG4 385 aaPredicted RBP9.68□□□□□ -0.86
SYNPO-204ENST00000519664 TLN2Q9Y4G6 2542 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 C15orf61A6NNL5 157 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 CFPP27918 469 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 LOXL3P58215 753 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 SAMD13Q5VXD3 122 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 DNM1P46Q6ZS02 220 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 B9A039 149 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 LY6HO94772 140 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 IGKV1D-33P01593 117 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 IGKV1-33P01594 117 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 NMUP48645 174 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 DMRTC2Q8IXT2 367 aaPredicted RBP9.68□□□□□ -0.86
SYNPO-204ENST00000519664 GRAMD2BQ96HH9 432 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 LINC00312Q9Y6C7 94 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 FBLL1A6NHQ2 334 aaKnown RBP9.68□□□□□ -0.86
SYNPO-204ENST00000519664 UPK2O00526 184 aa9.68□□□□□ -0.86
SYNPO-204ENST00000519664 CKS2P33552 79 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms