RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 TMEM249Q2WGJ8 235 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 FAM223AQ8IWN6 122 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 CACNA1DQ01668 2161 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 TRAV41A0A0B4J266 112 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 A0A1W2PPR1 153 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 SRRM4A7MD48 611 aaKnown RBP6.72□□□□□ -1.33
USP54-215ENST00000497106 ZNF727A8MUV8 499 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 HSBP1L1C9JCN9 74 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 H3BUA1 57 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 TMEM50AO95807 157 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 IGLV2-23P01705 113 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 MT-ND4LP03901 98 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 UBE2G1P62253 170 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 PRB3Q04118 309 aaPredicted RBP6.72□□□□□ -1.33
USP54-215ENST00000497106 ZNF674Q2M3X9 581 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 OR51G1Q8NGK1 321 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 RAB24Q969Q5 203 aa6.72□□□□□ -1.33
USP54-215ENST00000497106 XIRP2A4UGR9 3374 aa6.71□□□□□ -1.33
USP54-215ENST00000497106 MDFIC2A0A1B0GVS7 189 aa6.71□□□□□ -1.33
USP54-215ENST00000497106 A0A1W2PS18 150 aa6.71□□□□□ -1.33
USP54-215ENST00000497106 H3BUX3 64 aa6.71□□□□□ -1.33
USP54-215ENST00000497106 DIAPH2-AS1Q14236 149 aa6.71□□□□□ -1.33
USP54-215ENST00000497106 VN1R17PQ8TDU5 208 aa6.71□□□□□ -1.33
USP54-215ENST00000497106 RCC1LQ96I51 464 aaKnown RBP6.71□□□□□ -1.33
USP54-215ENST00000497106 RPS10P5Q9NQ39 176 aa6.71□□□□□ -1.33
USP54-215ENST00000497106 RPRMQ9NS64 109 aa6.71□□□□□ -1.33
USP54-215ENST00000497106 PROP1O75360 226 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 PAX6P26367 422 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 ZNF506Q5JVG8 444 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 KCNIP4Q6PIL6 250 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 OR10W1Q8NGF6 305 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 SMIM7Q9BQ49 75 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 C2orf88Q9BSF0 95 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 PAXXQ9BUH6 204 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 PPP1R2P9O14990 202 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 EBI3Q14213 229 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 C15orf54Q8N8G6 183 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 NECAP1Q8NC96 275 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 OR5T1Q8NG75 326 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 BSCL2Q96G97 398 aaPredicted RBP6.71□□□□□ -1.34
USP54-215ENST00000497106 USMG5Q96IX5 58 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 SMCO4Q9NRQ5 59 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 PUS1Q9Y606 427 aaKnown RBP eCLIP6.71□□□□□ -1.34
USP54-215ENST00000497106 UNC80Q8N2C7 3258 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 NBASA2RRP1 2371 aa6.71□□□□□ -1.34
USP54-215ENST00000497106 B4DEV8 164 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 APELAP0DMC3 54 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 KIAA2026Q5HYC2 2103 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 C10orf55Q5SWW7 151 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 GPR82Q96P67 336 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 GGTLC1Q9BX51 225 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 RABAC1Q9UI14 185 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 C11orf94C9JXX5 98 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 PF4V1P10720 104 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 SPSB3Q6PJ21 355 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 BRD3OSQ6XYD6 125 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 BPIFA4PQ86YQ2 179 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 TTC9CQ8N5M4 171 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 METTL26Q96S19 204 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 ELOVL1Q9BW60 279 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 ARL2-SNX15V9GYD0 113 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 ROS1P08922 2347 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 TRBV7-1A0A0A6YYK4 115 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 TRGV3P03979 118 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 GALR1P47211 349 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 GAMTQ14353 236 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 HABP2Q14520 560 aaPredicted RBP6.7□□□□□ -1.34
USP54-215ENST00000497106 CENPVQ7Z7K6 275 aaPredicted RBP6.7□□□□□ -1.34
USP54-215ENST00000497106 SGMS2Q8NHU3 365 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 MEGF9Q9H1U4 602 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 DOK5Q9P104 306 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 SPTBN4Q9H254 2564 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 OR2J3O76001 311 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 RPL7P18124 248 aaKnown RBP6.7□□□□□ -1.34
USP54-215ENST00000497106 FGF8P55075 233 aaPredicted RBP6.7□□□□□ -1.34
USP54-215ENST00000497106 BRWD1-AS2P59051 145 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 RUSC1-AS1Q66K80 236 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 C11orf42Q8N5U0 333 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 FOXC2Q99958 501 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 NAT8Q9UHE5 227 aa6.7□□□□□ -1.34
USP54-215ENST00000497106 LOC102723971A0A1B0GUV8 181 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 TMEM250H0YL14 139 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 TGOLN2O43493 480 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 COL8A1P27658 744 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 SAMD13Q5VXD3 122 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 ATP6V0BQ99437 205 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 NDFIP1Q9BT67 221 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 FAM74A7A6NL05 159 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 TPPP2P59282 170 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 MEF2BQ02080 365 aaPredicted RBP6.69□□□□□ -1.34
USP54-215ENST00000497106 FAM106AQ4KMX7 169 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 DAZAP1Q96EP5 407 aaKnown RBP6.69□□□□□ -1.34
USP54-215ENST00000497106 A0A0U1RQK1 487 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 ZNF785A8K8V0 405 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 FAM157CP0CG43 387 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 ARL16Q0P5N6 197 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 THAP8Q8NA92 274 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 DPF1Q92782 380 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 MGST2Q99735 147 aa6.69□□□□□ -1.34
USP54-215ENST00000497106 C1orf196B1AJZ1 125 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms