RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 A8MT66 165 aa1.94□□□□□ -2.1
VPS50-212ENST00000476413 SERPINE1P05121 402 aa1.94□□□□□ -2.1
VPS50-212ENST00000476413 UBBP0CG47 229 aa1.94□□□□□ -2.1
VPS50-212ENST00000476413 HSD11B1P28845 292 aa1.94□□□□□ -2.1
VPS50-212ENST00000476413 ZNF826PQ6ZT77 177 aa1.94□□□□□ -2.1
VPS50-212ENST00000476413 OOSP2Q86WS3 158 aa1.94□□□□□ -2.1
VPS50-212ENST00000476413 CCDC90BQ9GZT6 254 aa1.94□□□□□ -2.1
VPS50-212ENST00000476413 CYSTM1Q9H1C7 97 aa1.94□□□□□ -2.1
VPS50-212ENST00000476413 SLC39A9Q9NUM3 307 aa1.94□□□□□ -2.1
VPS50-212ENST00000476413 HMCN1Q96RW7 5635 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 ADGRL3Q9HAR2 1447 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 LAMB2P55268 1798 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 OR7C1O76099 320 aaPredicted RBP1.93□□□□□ -2.1
VPS50-212ENST00000476413 CYBAP13498 195 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 FKBP2P26885 142 aaKnown RBP1.93□□□□□ -2.1
VPS50-212ENST00000476413 CAPZBP47756 277 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 MRPS15P82914 257 aaKnown RBP1.93□□□□□ -2.1
VPS50-212ENST00000476413 LINC01554Q52M75 96 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 AKIRIN2Q53H80 203 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 AAED1Q7RTV5 226 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 DEFB128Q7Z7B8 93 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 KRT222Q8N1A0 295 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 Q8N2B8 174 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 SIGLECL1Q8N7X8 197 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 C15orf53Q8NAA6 179 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 WFDC11Q8NEX6 87 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 CHMP6Q96FZ7 201 aa1.93□□□□□ -2.1
VPS50-212ENST00000476413 TMEM212A6NML5 194 aa1.92□□□□□ -2.1
VPS50-212ENST00000476413 CST2P09228 141 aa1.92□□□□□ -2.1
VPS50-212ENST00000476413 CTAG1AP78358 180 aa1.92□□□□□ -2.1
VPS50-212ENST00000476413 HIST3H2BBQ8N257 126 aa1.92□□□□□ -2.1
VPS50-212ENST00000476413 DEFB119Q8N690 84 aa1.92□□□□□ -2.1
VPS50-212ENST00000476413 OR5A1Q8NGJ0 315 aa1.92□□□□□ -2.1
VPS50-212ENST00000476413 PRRC2BQ5JSZ5 2229 aaKnown RBP1.91□□□□□ -2.1
VPS50-212ENST00000476413 MRPS14O60783 128 aaKnown RBP1.91□□□□□ -2.1
VPS50-212ENST00000476413 ATP5HO75947 161 aa1.91□□□□□ -2.1
VPS50-212ENST00000476413 C8GP07360 202 aa1.91□□□□□ -2.1
VPS50-212ENST00000476413 SPI1P17947 270 aa1.91□□□□□ -2.1
VPS50-212ENST00000476413 DEFA3P59666 94 aa1.91□□□□□ -2.1
VPS50-212ENST00000476413 SPA17Q15506 151 aa1.91□□□□□ -2.1
VPS50-212ENST00000476413 Q6ZSA8 131 aa1.91□□□□□ -2.1
VPS50-212ENST00000476413 GINS4Q9BRT9 223 aa1.91□□□□□ -2.1
VPS50-212ENST00000476413 RTL1A6NKG5 1358 aa1.9□□□□□ -2.11
VPS50-212ENST00000476413 RP1L1Q8IWN7 2480 aaPredicted RBP1.9□□□□□ -2.11
VPS50-212ENST00000476413 A0A0D9SG52 128 aa1.9□□□□□ -2.11
VPS50-212ENST00000476413 FAM159BA6NKW6 160 aa1.9□□□□□ -2.11
VPS50-212ENST00000476413 SMIM17P0DL12 118 aa1.9□□□□□ -2.11
VPS50-212ENST00000476413 COX6A1P12074 109 aa1.9□□□□□ -2.11
VPS50-212ENST00000476413 PPIBP23284 216 aaKnown RBP1.9□□□□□ -2.11
VPS50-212ENST00000476413 TEX36Q5VZQ5 186 aa1.9□□□□□ -2.11
VPS50-212ENST00000476413 Q6Q795 121 aa1.9□□□□□ -2.11
VPS50-212ENST00000476413 UNQ6190/PRO20217Q6UXQ8 127 aa1.9□□□□□ -2.11
VPS50-212ENST00000476413 S100A7AQ86SG5 101 aa1.9□□□□□ -2.11
VPS50-212ENST00000476413 SLC25A40Q8TBP6 338 aa1.9□□□□□ -2.11
VPS50-212ENST00000476413 C2orf50Q96LR7 162 aa1.9□□□□□ -2.11
VPS50-212ENST00000476413 ADAT1Q9BUB4 502 aaKnown RBP1.9□□□□□ -2.11
VPS50-212ENST00000476413 C19orf84I3L1E1 186 aa1.89□□□□□ -2.11
VPS50-212ENST00000476413 KHDC3LQ587J8 217 aa1.89□□□□□ -2.11
VPS50-212ENST00000476413 LCA10Q71F78 164 aa1.89□□□□□ -2.11
VPS50-212ENST00000476413 WFDC5Q8TCV5 224 aa1.89□□□□□ -2.11
VPS50-212ENST00000476413 KIFC1Q9BW19 673 aa1.89□□□□□ -2.11
VPS50-212ENST00000476413 RNF122Q9H9V4 155 aa1.89□□□□□ -2.11
VPS50-212ENST00000476413 NMNAT1Q9HAN9 279 aaPredicted RBP1.89□□□□□ -2.11
VPS50-212ENST00000476413 RIC1Q4ADV7 1423 aa1.89□□□□□ -2.11
VPS50-212ENST00000476413 ANAPC1Q9H1A4 1944 aa1.89□□□□□ -2.11
VPS50-212ENST00000476413 RP1P56715 2156 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 IGKV2-29A2NJV5 120 aaPredicted RBP1.88□□□□□ -2.11
VPS50-212ENST00000476413 TCL1BO95988 128 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 SERPINA1P01009 418 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 RNASE3P12724 160 aaKnown RBP1.88□□□□□ -2.11
VPS50-212ENST00000476413 SRIP30626 198 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 RHEBQ15382 184 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 LIN52Q52LA3 116 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 DPPA3Q6W0C5 159 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 OR4E2Q8NGC2 313 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 OR4D11Q8NGI4 311 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 ADAT3Q96EY9 351 aaPredicted RBP1.88□□□□□ -2.11
VPS50-212ENST00000476413 OSTCQ9NRP0 149 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 ARL2BPQ9Y2Y0 163 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 KIF1BO60333 1816 aa1.88□□□□□ -2.11
VPS50-212ENST00000476413 OR5F1O95221 314 aa1.87□□□□□ -2.11
VPS50-212ENST00000476413 S100A4P26447 101 aaKnown RBP1.87□□□□□ -2.11
VPS50-212ENST00000476413 CASP1P29466 404 aa1.87□□□□□ -2.11
VPS50-212ENST00000476413 C10orf55Q5SWW7 151 aa1.87□□□□□ -2.11
VPS50-212ENST00000476413 OR11H6Q8NGC7 330 aa1.87□□□□□ -2.11
VPS50-212ENST00000476413 OR10X1Q8NGY0 326 aa1.87□□□□□ -2.11
VPS50-212ENST00000476413 BTF3L4Q96K17 158 aa1.87□□□□□ -2.11
VPS50-212ENST00000476413 SLC50A1Q9BRV3 221 aa1.87□□□□□ -2.11
VPS50-212ENST00000476413 PARVBQ9HBI1 364 aa1.87□□□□□ -2.11
VPS50-212ENST00000476413 TVP23BQ9NYZ1 205 aa1.87□□□□□ -2.11
VPS50-212ENST00000476413 CAMSAP1Q5T5Y3 1602 aa1.87□□□□□ -2.11
VPS50-212ENST00000476413 MED1Q15648 1581 aaPredicted RBP1.86□□□□□ -2.11
VPS50-212ENST00000476413 MYH7BA7E2Y1 1941 aa1.86□□□□□ -2.11
VPS50-212ENST00000476413 IGKV1-9A0A0C4DH69 117 aa1.86□□□□□ -2.11
VPS50-212ENST00000476413 OR2T1O43869 369 aa1.86□□□□□ -2.11
VPS50-212ENST00000476413 SERPINB9P50453 376 aa1.86□□□□□ -2.11
VPS50-212ENST00000476413 CDK5R1Q15078 307 aa1.86□□□□□ -2.11
VPS50-212ENST00000476413 TRAPPC6BQ86SZ2 158 aa1.86□□□□□ -2.11
VPS50-212ENST00000476413 RPS19BP1Q86WX3 136 aaKnown RBP1.86□□□□□ -2.11
VPS50-212ENST00000476413 RETNLBQ9BQ08 111 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms