RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 IAH1Q2TAA2 248 aaPredicted RBP0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 C12orf74Q32Q52 190 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 KRT222Q8N1A0 295 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 HIST3H2BBQ8N257 126 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 SIGLECL1Q8N7X8 197 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 GDPD1Q8N9F7 314 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 OR4D11Q8NGI4 311 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 OR5A1Q8NGJ0 315 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 SERPINI1Q99574 410 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 SLC50A1Q9BRV3 221 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 C14orf105Q9NVL8 296 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 GLTPQ9NZD2 209 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 SLC22A13Q9Y226 551 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 MYOFQ9NZM1 2061 aa0.82□□□□□ -2.28
CCDC88A-212ENST00000474059 RP1L1Q8IWN7 2480 aaPredicted RBP0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 CUL9Q8IWT3 2517 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 MICAL3Q7RTP6 2002 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 TRAV14DV4A0A0A6YYC5 116 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 A0A0D9SG52 128 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 FUOMA2VDF0 154 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 FADS1O60427 444 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 S100A6P06703 90 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 COX6A1P12074 109 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 CCL7P80098 99 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 TMEM97Q5BJF2 176 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 DPPA3Q6W0C5 159 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 OR6V1Q8N148 313 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 LINC00471Q8N535 108 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 C12orf45Q8N5I9 185 aaPredicted RBP0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 OR4E2Q8NGC2 313 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 CT55Q8WUE5 264 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 AQP3Q92482 292 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 PRAP1Q96NZ9 151 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 TRIM4Q9C037 500 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 CCDC90BQ9GZT6 254 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 RNASE7Q9H1E1 156 aaKnown RBP0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 TLNRD1Q9H1K6 362 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 IDI2-AS1Q9NZ38 188 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 CYSLTR1Q9Y271 337 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 ANAPC1Q9H1A4 1944 aa0.81□□□□□ -2.28
CCDC88A-212ENST00000474059 KMT2BQ9UMN6 2715 aaPredicted RBP0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 hCG_1818297A0A087WSY0 165 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 TRAV1-1A0A0B4J248 108 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 A8MT66 165 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 OR2T1O43869 369 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 PDE6DO43924 150 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 ZNF682O95780 498 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 TCL1BO95988 128 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 HAND1O96004 215 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 ASAH2BP0C7U1 165 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 HIST1H3AP68431 136 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 H3F3AP84243 136 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 RHEBQ15382 184 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 LINC01554Q52M75 96 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 SPANXN5Q5MJ07 72 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 TRAPPC6BQ86SZ2 158 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 C12orf29Q8N999 325 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 OR51A2Q8NGJ7 313 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 OR5AC2Q9NZP5 309 aa0.8□□□□□ -2.28
CCDC88A-212ENST00000474059 PLXND1Q9Y4D7 1925 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 C2orf70A6NJV1 201 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 SERPINE1P05121 402 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 C8GP07360 202 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 CTXN2P0C2S0 81 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 IL9P15248 144 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 S100A4P26447 101 aaKnown RBP0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 AP3S2P59780 193 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 ERVS71-1P61550 626 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 FADDQ13158 208 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 TEX36Q5VZQ5 186 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 OOSP2Q86WS3 158 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 LINC00311Q8N616 119 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 OR52L1Q8NGH7 329 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 OR4C6Q8NH72 309 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 OSTCQ9NRP0 149 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 UQCC1Q9NVA1 299 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 FBXO5Q9UKT4 447 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 RTL1A6NKG5 1358 aa0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 BAZ2BQ9UIF8 2168 aaKnown RBP0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 PCF11O94913 1555 aaKnown RBP0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 MED1Q15648 1581 aaPredicted RBP0.79□□□□□ -2.28
CCDC88A-212ENST00000474059 BRWD1Q9NSI6 2320 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 OR2B3O76000 313 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 SMIM17P0DL12 118 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 MIFP14174 115 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 PPIBP23284 216 aaKnown RBP0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 CASP1P29466 404 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 BRS3P32247 399 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 SSR2P43308 183 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 DEFA3P59666 94 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 YPEL3P61236 119 aaPredicted RBP0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 PHF13Q86YI8 300 aaPredicted RBP0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 SLC25A40Q8TBP6 338 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 GPR146Q96CH1 333 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 C2orf50Q96LR7 162 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 MIXL1Q9H2W2 232 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 TRABDQ9H4I3 376 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 TAS2R4Q9NYW5 299 aa0.78□□□□□ -2.28
CCDC88A-212ENST00000474059 KIF1BO60333 1816 aa0.78□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms