RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 NUP35Q8NFH5 326 aa12.35□□□□□ -0.43
C9orf3-204ENST00000424143 NUDT10Q8NFP7 164 aa12.35□□□□□ -0.43
C9orf3-204ENST00000424143 NUDT11Q96G61 164 aa12.35□□□□□ -0.43
C9orf3-204ENST00000424143 CLEC7AQ9BXN2 247 aa12.35□□□□□ -0.43
C9orf3-204ENST00000424143 SERTAD4Q9NUC0 356 aa12.35□□□□□ -0.43
C9orf3-204ENST00000424143 ZNF492Q9P255 531 aa12.35□□□□□ -0.43
C9orf3-204ENST00000424143 CDX4O14627 284 aaPredicted RBP12.34□□□□□ -0.43
C9orf3-204ENST00000424143 TSPOP30536 169 aa12.34□□□□□ -0.43
C9orf3-204ENST00000424143 RPL8P62917 257 aaKnown RBP12.34□□□□□ -0.43
C9orf3-204ENST00000424143 UTF1Q5T230 341 aa12.34□□□□□ -0.43
C9orf3-204ENST00000424143 HES3Q5TGS1 186 aa12.34□□□□□ -0.43
C9orf3-204ENST00000424143 C10orf113Q5VZT2 155 aa12.34□□□□□ -0.43
C9orf3-204ENST00000424143 C11orf42Q8N5U0 333 aa12.34□□□□□ -0.43
C9orf3-204ENST00000424143 NHLRC2Q8NBF2 726 aa12.34□□□□□ -0.43
C9orf3-204ENST00000424143 GFRA4Q9GZZ7 299 aa12.34□□□□□ -0.43
C9orf3-204ENST00000424143 FAM181BA6NEQ2 426 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 SIAH2O43255 324 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 COX7A2P2O60397 106 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 HSBP1O75506 76 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 NDUFB8O95169 186 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 MYOD1P15172 320 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 TNFSF4P23510 183 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 MFAP2P55001 183 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 TCL1AP56279 114 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 MOB3BQ86TA1 216 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 STPG4Q8N801 248 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 LEAP2Q969E1 77 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 CHCHD1Q96BP2 118 aaKnown RBP12.33□□□□□ -0.43
C9orf3-204ENST00000424143 FXYD5Q96DB9 178 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 GAL3ST2Q9H3Q3 398 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 TNFRSF19Q9NS68 423 aa12.33□□□□□ -0.43
C9orf3-204ENST00000424143 DSCAMO60469 2012 aa12.33□□□□□ -0.44
C9orf3-204ENST00000424143 IGHV3-7P01780 117 aa12.33□□□□□ -0.44
C9orf3-204ENST00000424143 IGKV1-16P04430 117 aa12.33□□□□□ -0.44
C9orf3-204ENST00000424143 RPS20P60866 119 aaKnown RBP12.33□□□□□ -0.44
C9orf3-204ENST00000424143 UBE2G1P62253 170 aa12.33□□□□□ -0.44
C9orf3-204ENST00000424143 TNXAQ16473 311 aa12.33□□□□□ -0.44
C9orf3-204ENST00000424143 SPRNQ5BIV9 151 aa12.33□□□□□ -0.44
C9orf3-204ENST00000424143 ETFRF1Q6IPR1 90 aa12.33□□□□□ -0.44
C9orf3-204ENST00000424143 PDPNQ86YL7 162 aa12.33□□□□□ -0.44
C9orf3-204ENST00000424143 ZCCHC24Q8N2G6 241 aaKnown RBP12.33□□□□□ -0.44
C9orf3-204ENST00000424143 SNRNP40Q96DI7 357 aaKnown RBP12.33□□□□□ -0.44
C9orf3-204ENST00000424143 MLST8Q9BVC4 326 aa12.33□□□□□ -0.44
C9orf3-204ENST00000424143 PRSS22Q9GZN4 317 aa12.33□□□□□ -0.44
C9orf3-204ENST00000424143 ZNF355PQ9NSJ1 428 aa12.33□□□□□ -0.44
C9orf3-204ENST00000424143 IGHV1-69-2A0A0G2JMI3 117 aa12.32□□□□□ -0.44
C9orf3-204ENST00000424143 C2orf70A6NJV1 201 aa12.32□□□□□ -0.44
C9orf3-204ENST00000424143 SPINK4O60575 86 aa12.32□□□□□ -0.44
C9orf3-204ENST00000424143 CRYGCP07315 174 aa12.32□□□□□ -0.44
C9orf3-204ENST00000424143 GATA2P23769 480 aaPredicted RBP12.32□□□□□ -0.44
C9orf3-204ENST00000424143 LPAL2Q16609 132 aa12.32□□□□□ -0.44
C9orf3-204ENST00000424143 ATP1A1-AS1Q5TC04 95 aa12.32□□□□□ -0.44
C9orf3-204ENST00000424143 GDF5OSQ5U4N7 250 aa12.32□□□□□ -0.44
C9orf3-204ENST00000424143 FAM168AQ92567 244 aa12.32□□□□□ -0.44
C9orf3-204ENST00000424143 EPDR1Q9UM22 224 aa12.32□□□□□ -0.44
C9orf3-204ENST00000424143 HEATR1Q9H583 2144 aaKnown RBP12.32□□□□□ -0.44
C9orf3-204ENST00000424143 IGKV1D-37A0A075B6S9 117 aa12.31□□□□□ -0.44
C9orf3-204ENST00000424143 C22orf46C9J442 243 aa12.31□□□□□ -0.44
C9orf3-204ENST00000424143 SPRY3O43610 288 aa12.31□□□□□ -0.44
C9orf3-204ENST00000424143 OR5AL1P0C617 328 aa12.31□□□□□ -0.44
C9orf3-204ENST00000424143 ZNF137PP52743 207 aa12.31□□□□□ -0.44
C9orf3-204ENST00000424143 TNFAIP6P98066 277 aaPredicted RBP12.31□□□□□ -0.44
C9orf3-204ENST00000424143 BATFQ16520 125 aa12.31□□□□□ -0.44
C9orf3-204ENST00000424143 PATE2Q6UY27 113 aa12.31□□□□□ -0.44
C9orf3-204ENST00000424143 MUC15Q8N387 334 aa12.31□□□□□ -0.44
C9orf3-204ENST00000424143 PERPQ96FX8 193 aa12.31□□□□□ -0.44
C9orf3-204ENST00000424143 GPR82Q96P67 336 aa12.31□□□□□ -0.44
C9orf3-204ENST00000424143 ST20Q9HBF5 79 aa12.31□□□□□ -0.44
C9orf3-204ENST00000424143 TRBV6-1A0A0K0K1D8 114 aa12.3□□□□□ -0.44
C9orf3-204ENST00000424143 A8MWL6 223 aa12.3□□□□□ -0.44
C9orf3-204ENST00000424143 M0R2Z0 102 aa12.3□□□□□ -0.44
C9orf3-204ENST00000424143 SP9P0CG40 484 aa12.3□□□□□ -0.44
C9orf3-204ENST00000424143 PLP1P60201 277 aa12.3□□□□□ -0.44
C9orf3-204ENST00000424143 DHRS13Q6UX07 377 aa12.3□□□□□ -0.44
C9orf3-204ENST00000424143 FAM19A2Q8N3H0 131 aa12.3□□□□□ -0.44
C9orf3-204ENST00000424143 OR4C13Q8NGP0 309 aa12.3□□□□□ -0.44
C9orf3-204ENST00000424143 OR10X1Q8NGY0 326 aa12.3□□□□□ -0.44
C9orf3-204ENST00000424143 FLYWCH2Q96CP2 140 aaKnown RBP12.3□□□□□ -0.44
C9orf3-204ENST00000424143 FAM122AQ96E09 287 aa12.3□□□□□ -0.44
C9orf3-204ENST00000424143 TRGV9Q99603 122 aa12.3□□□□□ -0.44
C9orf3-204ENST00000424143 TRAV5A0A0B4J249 113 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 NKX6-3A6NJ46 265 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 K7EP13 123 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 IGHV1-46P01743 117 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 HBBP68871 147 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 SLC35B1P78383 322 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 MLANAQ16655 118 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 EBLN2Q6P2I7 272 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 SEM1Q6ZVN7 128 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 ZNF738Q8NE65 137 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 NUP37Q8NFH4 326 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 FDCSPQ8NFU4 85 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 OR2T6Q8NHC8 308 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 TMEM186Q96B77 213 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 FMC1Q96HJ9 113 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 HARBI1Q96MB7 349 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 COX11Q9Y6N1 276 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 TECTAO75443 2155 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 IGLC7A0M8Q6 106 aa12.29□□□□□ -0.44
C9orf3-204ENST00000424143 C19orf71A6NCJ1 209 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms